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CT45A1 cancer/testis antigen family 45 member A1 [ Homo sapiens (human) ]

Gene ID: 541466, updated on 12-Oct-2019

Summary

Official Symbol
CT45A1provided by HGNC
Official Full Name
cancer/testis antigen family 45 member A1provided by HGNC
Primary source
HGNC:HGNC:33267
See related
Ensembl:ENSG00000268940 MIM:300648
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT45; CT45-1; CT45.1
Expression
Restricted expression toward testis (RPKM 10.8) See more

Genomic context

See CT45A1 in Genome Data Viewer
Location:
Xq26.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (135708398..135723318)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134847185..134856988)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene sarcoma antigen 3, pseudogene Neighboring gene sarcoma antigen 2, pseudogene Neighboring gene MGAT2 pseudogene 1 Neighboring gene MGAT2 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GOA

Process Evidence Code Pubs
snRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integrator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
cancer/testis antigen family 45 member A1
Names
cancer/testis antigen 45-1
cancer/testis antigen 45A1
cancer/testis antigen CT45-1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017417.2NP_001017417.1  cancer/testis antigen family 45 member A1

    See identical proteins and their annotated locations for NP_001017417.1

    Status: VALIDATED

    Source sequence(s)
    AA757285, AC240442, AY743709
    Consensus CDS
    CCDS48174.1
    UniProtKB/Swiss-Prot
    Q5HYN5
    Related
    ENSP00000472303.1, ENST00000594565.5
    Conserved Domains (1) summary
    pfam15300
    Location:122183
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    135708398..135723318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011531352.1XP_011529654.1  cancer/testis antigen family 45 member A1 isoform X1

    See identical proteins and their annotated locations for XP_011529654.1

    UniProtKB/Swiss-Prot
    Q5HYN5
    Related
    ENSP00000470185.2, ENST00000594117.4
    Conserved Domains (1) summary
    pfam15300
    Location:122183
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus
  2. XM_005278141.4XP_005278198.1  cancer/testis antigen family 45 member A1 isoform X1

    See identical proteins and their annotated locations for XP_005278198.1

    UniProtKB/Swiss-Prot
    Q5HYN5
    Conserved Domains (1) summary
    pfam15300
    Location:122183
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus
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