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CT45A6 cancer/testis antigen family 45 member A6 [ Homo sapiens (human) ]

Gene ID: 541465, updated on 5-Dec-2019

Summary

Official Symbol
CT45A6provided by HGNC
Official Full Name
cancer/testis antigen family 45 member A6provided by HGNC
Primary source
HGNC:HGNC:33271
See related
Ensembl:ENSG00000278289 MIM:300797
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT45-5; CT45-6; CT45.6; CT45A5; CT45A7
Expression
Restricted expression toward testis (RPKM 10.1) See more

Genomic context

See CT45A6 in Genome Data Viewer
Location:
Xq26.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (135794687..135802761, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134963213..134971244, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene cancer/testis antigen family 45 member A3 Neighboring gene cancer/testis antigen family 45 member A5 Neighboring gene cancer/testis antigen family 45 member A2 Neighboring gene cancer/testis antigen family 45 member A7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Gene Ontology Provided by GOA

Process Evidence Code Pubs
snRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integrator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
cancer/testis antigen family 45 member A6
Names
Cancer/testis antigen 45-5
Cancer/testis antigen 45A5
Cancer/testis antigen 45A7
Cancer/testis antigen family 45 member A5
Cancer/testis antigen family 45 member A7
cancer/testis antigen 45-4/6
cancer/testis antigen 45-6
cancer/testis antigen 45A4/45A6
cancer/testis antigen 45A6
cancer/testis antigen CT45-6
cancer/testis antigen family 45 member A4/A6

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017438.3NP_001017438.2  cancer/testis antigen family 45 member A6

    See identical proteins and their annotated locations for NP_001017438.2

    Status: VALIDATED

    Source sequence(s)
    AC240441
    Consensus CDS
    CCDS35407.1
    UniProtKB/Swiss-Prot
    P0DMU7, P0DMU8, P0DMV0
    Related
    ENSP00000479608.1, ENST00000620654.1
    Conserved Domains (1) summary
    pfam15300
    Location:122183
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    135794687..135802761 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011531351.2XP_011529653.1  cancer/testis antigen family 45 member A6 isoform X1

    See identical proteins and their annotated locations for XP_011529653.1

    UniProtKB/Swiss-Prot
    P0DMU7, P0DMU8, P0DMV0
    Related
    ENSP00000483910.1, ENST00000612878.4
    Conserved Domains (1) summary
    pfam15300
    Location:122183
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus
  2. XM_005262425.4XP_005262482.2  cancer/testis antigen family 45 member A6 isoform X1

    See identical proteins and their annotated locations for XP_005262482.2

    UniProtKB/Swiss-Prot
    P0DMU7, P0DMU8, P0DMV0
    Conserved Domains (1) summary
    pfam15300
    Location:122183
    INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus
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