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KCNC1 potassium voltage-gated channel subfamily C member 1 [ Bos taurus (cattle) ]

Gene ID: 541459, updated on 5-Mar-2024

Summary

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Official Symbol
KCNC1provided by VGNC
Official Full Name
potassium voltage-gated channel subfamily C member 1provided by VGNC
Primary source
VGNC:VGNC:30432
See related
Ensembl:ENSBTAG00000005424
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (34734860..34779954, complement)

Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132342323 Neighboring gene tryptophan hydroxylase 1 Neighboring gene secretion regulating guanine nucleotide exchange factor Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene myogenic differentiation 1 Neighboring gene otogelin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A second generation radiation hybrid map to aid the assembly of the bovine genome sequence. Jann OC, et al. BMC Genomics, 2006 Nov 6. PMID 17087818, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables delayed rectifier potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated potassium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium voltage-gated channel subfamily C member 1
Names
Shaw-related voltage-gated potassium channel protein 1
potassium voltage-gated channel, Shaw-related subfamily, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013605.1 → NP_001013623.1  potassium voltage-gated channel subfamily C member 1 isoform B

    See identical proteins and their annotated locations for NP_001013623.1

    Status: VALIDATED

    Source sequence(s)
    AY928178
    UniProtKB/TrEMBL
    A7E3B1, Q5BN36
    Conserved Domains (4) summary
    smart00225
    Location:10 → 112
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:235 → 447
    Ion_trans; Ion transport protein
    pfam02214
    Location:10 → 104
    BTB_2; BTB/POZ domain
    pfam07885
    Location:390 → 437
    Ion_trans_2; Ion channel

  2. NM_001113281.1 → NP_001106752.1  potassium voltage-gated channel subfamily C member 1 isoform A

    Status: VALIDATED

    Source sequence(s)
    AY928178, CO873358, DN524278, DN524346
    UniProtKB/TrEMBL
    Q5BN36
    Related
    ENSBTAP00000007132.3, ENSBTAT00000007132.4
    Conserved Domains (4) summary
    smart00225
    Location:10 → 112
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:235 → 447
    Ion_trans; Ion transport protein
    pfam02214
    Location:10 → 104
    BTB_2; BTB/POZ domain
    pfam07885
    Location:390 → 437
    Ion_trans_2; Ion channel

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    34734860..34779954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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