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xpc xeroderma pigmentosum, complementation group C [ Danio rerio (zebrafish) ]

Gene ID: 541386, updated on 1-Aug-2018

Summary

Official Symbol
xpcprovided by ZNC
Official Full Name
xeroderma pigmentosum, complementation group Cprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8461
See related
Ensembl:ENSDARG00000039754 Vega:OTTDARG00000018353
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
wu:fb12d05; wu:fb12d09; zgc:113032
Orthologs

Genomic context

See xpc in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (26007990..26030951)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (25988851..26011811)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene si:dkey-72l14.3 Neighboring gene microRNA 135b Neighboring gene ariadne homolog 2 (Drosophila) Neighboring gene IMP (inosine 5'-monophosphate) dehydrogenase 2

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
damaged DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 
single-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
mismatch repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleotide-excision repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
XPC complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleotide-excision repair factor 2 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
DNA repair protein complementing XP-C cells

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045210.1NP_001038675.1  DNA repair protein complementing XP-C cells

    Status: PROVISIONAL

    Source sequence(s)
    BX784025
    UniProtKB/TrEMBL
    Q1LVE4
    Related
    ENSDARP00000058099.6, OTTDARP00000018647, ENSDART00000058100.7, OTTDART00000022241
    Conserved Domains (5) summary
    smart01032
    Location:686760
    BHD_3; Rad4 beta-hairpin domain 3
    smart01030
    Location:566617
    BHD_1; Rad4 beta-hairpin domain 1
    smart01031
    Location:620678
    BHD_2; Rad4 beta-hairpin domain 2
    TIGR00605
    Location:135801
    rad4; DNA repair protein rad4
    pfam03835
    Location:466562
    Rad4; Rad4 transglutaminase-like domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    26007990..26030951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478247.1XP_021333922.1  DNA repair protein complementing XP-C cells isoform X1

    Conserved Domains (1) summary
    cl26537
    Location:100766
    BHD_3; Rad4 beta-hairpin domain 3
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