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mybpc2b myosin binding protein Cb [ Danio rerio (zebrafish) ]

Gene ID: 541384, updated on 25-Aug-2020

Summary

Official Symbol
mybpc2bprovided by ZNC
Official Full Name
myosin binding protein Cbprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050320-80
See related
Ensembl:ENSDARG00000021265
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:713711; im:715008; im:7137115; im:7150089; zgc:110761
Orthologs

Genomic context

See mybpc2b in Genome Data Viewer
Location:
chromosome: 24
Exon count:
30
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (38259520..38348808)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (38371559..38460935)
103 previous assembly Zv9 (GCF_000002035.4) 24 NC_007135.5 (39796198..39842799)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene zgc:91999 Neighboring gene leucine rich repeat containing 4Bb Neighboring gene uncharacterized LOC108179067

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
muscle tissue development IMP
Inferred from Mutant Phenotype
more info
PubMed 

General protein information

Preferred Names
myosin binding protein Cb; myosin-binding protein C, fast-type
Names
myosin binding protein C, fast type b

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013511.2NP_001013529.2  myosin binding protein Cb

    Status: PROVISIONAL

    Source sequence(s)
    BC091662, CK677061, CK677308, EB776017, EB790963, EB866488, EE327610, EE714531, EE714901, EE719585
    UniProtKB/TrEMBL
    Q5BJ14
    Conserved Domains (7) summary
    cd00096
    Location:10321097
    Ig; Immunoglobulin domain
    cd05748
    Location:822894
    Ig_Titin_like; Immunoglobulin (Ig)-like domain of titin and similar proteins
    cd05894
    Location:515600
    Ig_C5_MyBP-C; C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)
    smart00410
    Location:518600
    IG_like; Immunoglobulin like
    cd00063
    Location:604690
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:10131102
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:224295
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    38259520..38348808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353828.2XP_017209317.1  myosin-binding protein C, fast-type isoform X2

  2. XM_021470160.1XP_021325835.1  myosin-binding protein C, fast-type isoform X3

    Related
    ENSDARP00000096449.5, ENSDART00000105672.5
    Conserved Domains (6) summary
    cd05894
    Location:508593
    Ig_C5_MyBP-C; C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)
    smart00410
    Location:26121
    IG_like; Immunoglobulin like
    cd00063
    Location:597683
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:10061095
    I-set; Immunoglobulin I-set domain
    cd05748
    Location:815887
    Ig_Titin_like; Immunoglobulin (Ig)-like domain of titin and similar domains
    cl28434
    Location:397468
    I-set; Immunoglobulin I-set domain
  3. XM_021470159.1XP_021325834.1  myosin-binding protein C, fast-type isoform X1

    Conserved Domains (6) summary
    cd05894
    Location:514599
    Ig_C5_MyBP-C; C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)
    smart00410
    Location:32127
    IG_like; Immunoglobulin like
    cd00063
    Location:603689
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:10121101
    I-set; Immunoglobulin I-set domain
    cd05748
    Location:821893
    Ig_Titin_like; Immunoglobulin (Ig)-like domain of titin and similar domains
    cl28434
    Location:403474
    I-set; Immunoglobulin I-set domain
  4. XM_021470161.1XP_021325836.1  myosin-binding protein C, fast-type isoform X4

    Conserved Domains (6) summary
    cd05894
    Location:508593
    Ig_C5_MyBP-C; C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)
    smart00410
    Location:26121
    IG_like; Immunoglobulin like
    cd00063
    Location:597683
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:10061095
    I-set; Immunoglobulin I-set domain
    cd05748
    Location:815887
    Ig_Titin_like; Immunoglobulin (Ig)-like domain of titin and similar domains
    cl28434
    Location:397468
    I-set; Immunoglobulin I-set domain
  5. XM_021470162.1XP_021325837.1  myosin-binding protein C, fast-type isoform X5

    Related
    ENSDARP00000115895.1, ENSDART00000143184.2
    Conserved Domains (6) summary
    cd05894
    Location:507592
    Ig_C5_MyBP-C; C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)
    smart00410
    Location:25120
    IG_like; Immunoglobulin like
    cd00063
    Location:596682
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:10051094
    I-set; Immunoglobulin I-set domain
    cd05748
    Location:814886
    Ig_Titin_like; Immunoglobulin (Ig)-like domain of titin and similar domains
    cl28434
    Location:396467
    I-set; Immunoglobulin I-set domain
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