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sptssa serine palmitoyltransferase, small subunit A [ Danio rerio (zebrafish) ]

Gene ID: 541337, updated on 19-Jun-2024

Summary

Official Symbol
sptssaprovided by ZNC
Official Full Name
serine palmitoyltransferase, small subunit Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050320-26
See related
Ensembl:ENSDARG00000071203 AllianceGenome:ZFIN:ZDB-GENE-050320-26
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb60h11; zgc:112487
Summary
Predicted to contribute to serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to act upstream of or within sphingolipid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of serine C-palmitoyltransferase complex. Orthologous to human SPTSSA (serine palmitoyltransferase small subunit A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See sptssa in Genome Data Viewer
Location:
chromosome: 17
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (9944495..9950328, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (9788451..9794284, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103909016 Neighboring gene uncharacterized LOC108179745 Neighboring gene egl-9 family hypoxia-inducible factor 3 Neighboring gene e2f-associated phosphoprotein Neighboring gene sorting nexin 6

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
contributes_to serine C-palmitoyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
contributes_to serine C-palmitoyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
part_of serine palmitoyltransferase complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of serine palmitoyltransferase complex ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
serine palmitoyltransferase small subunit A
Names
small subunit of serine palmitoyltransferase A
ssSPTa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093727.1NP_001087196.1  serine palmitoyltransferase small subunit A

    See identical proteins and their annotated locations for NP_001087196.1

    Status: PROVISIONAL

    Source sequence(s)
    BC091542
    UniProtKB/Swiss-Prot
    Q5BJC1
    Related
    ENSDARP00000095888.3, ENSDART00000105117.5
    Conserved Domains (1) summary
    pfam11779
    Location:760
    DUF3317; Protein of unknown function (DUF3317)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    9944495..9950328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)