Format

Send to:

Choose Destination

ccnh cyclin H [ Danio rerio (zebrafish) ]

Gene ID: 541325, updated on 17-Nov-2020

Summary

Official Symbol
ccnhprovided by ZNC
Official Full Name
cyclin Hprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050320-13
See related
Ensembl:ENSDARG00000007657
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:114132
Orthologs

Genomic context

See ccnh in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (47963938..47975440, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (47312429..47323954, complement)
103 previous assembly Zv9 (GCF_000002035.4) 5 NC_007116.5 (49746728..49758231, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108190109 Neighboring gene cytochrome c oxidase subunit 7C Neighboring gene RAS p21 protein activator (GTPase activating protein) 1a Neighboring gene uncharacterized LOC100150296 Neighboring gene transmembrane protein 161B

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
cyclin-dependent protein serine/threonine kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cyclin-dependent protein serine/threonine kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
phosphorylation of RNA polymerase II C-terminal domain IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cyclin-dependent protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor TFIIK complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor TFIIK complex IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013453.1NP_001013471.1  cyclin-H

    See identical proteins and their annotated locations for NP_001013471.1

    Status: PROVISIONAL

    Source sequence(s)
    BC091559
    UniProtKB/TrEMBL
    Q5BJA4
    Related
    ENSDARP00000004735.4, ENSDART00000007057.5
    Conserved Domains (3) summary
    TIGR00569
    Location:2302
    ccl1; cyclin ccl1
    smart00385
    Location:62152
    CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma
    pfam16899
    Location:162262
    Cyclin_C_2; Cyclin C-terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    47963938..47975440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005165512.4XP_005165569.1  cyclin-H isoform X2

    UniProtKB/TrEMBL
    A2BGI0
    Conserved Domains (3) summary
    TIGR00569
    Location:2302
    ccl1; cyclin ccl1
    smart00385
    Location:62152
    CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma
    pfam16899
    Location:162262
    Cyclin_C_2; Cyclin C-terminal domain
  2. XM_021476140.1XP_021331815.1  cyclin-H isoform X1

    Conserved Domains (1) summary
    cl28538
    Location:14314
    CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Support Center