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SMIM11A small integral membrane protein 11A [ Homo sapiens (human) ]

Gene ID: 54065, updated on 1-Jun-2020

Summary

Official Symbol
SMIM11Aprovided by HGNC
Official Full Name
small integral membrane protein 11Aprovided by HGNC
Primary source
HGNC:HGNC:1293
See related
Ensembl:ENSG00000205670
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SMIM11; FAM165B; SMIM11B; C21orf51
Expression
Ubiquitous expression in brain (RPKM 5.9), thyroid (RPKM 5.4) and 25 other tissues See more
Orthologs

Genomic context

See SMIM11A in Genome Data Viewer
Location:
21q22.11-q22.12
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (34375507..34389151)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (35747749..35761452)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs2174 Neighboring gene uncharacterized LOC105372791 Neighboring gene potassium voltage-gated channel subfamily E regulatory subunit 2 Neighboring gene Sharpr-MPRA regulatory region 13847 Neighboring gene uncharacterized LOC105372793 Neighboring gene family with sequence similarity 243 member A Neighboring gene small integral membrane protein 34A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small integral membrane protein 11A
Names
family with sequence similarity 165, member B
protein FAM165B
small integral membrane protein 11

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001376899.1NP_001363828.1  small integral membrane protein 11A

    Status: VALIDATED

    Source sequence(s)
    AP000320, AP000321
    Related
    ENSP00000382234.2, ENST00000399295.2
  2. NM_058182.5NP_478062.1  small integral membrane protein 11A

    See identical proteins and their annotated locations for NP_478062.1

    Status: VALIDATED

    Source sequence(s)
    AP000320, AP000321
    Consensus CDS
    CCDS33550.1
    UniProtKB/Swiss-Prot
    P58511
    Related
    ENSP00000382231.3, ENST00000399292.7
    Conserved Domains (1) summary
    pfam14981
    Location:453
    FAM165; FAM165 family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    34375507..34389151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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