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ATG9A autophagy related 9A [ Bos taurus (cattle) ]

Gene ID: 540482, updated on 21-Jan-2019

Summary

Official Symbol
ATG9Aprovided by VGNC
Official Full Name
autophagy related 9Aprovided by VGNC
Primary source
VGNC:VGNC:26262
See related
BGD:BT13106; Ensembl:ENSBTAG00000020608
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
ATG9
Orthologs

Genomic context

See ATG9A in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 2 NC_037329.1 (107170282..107179778, complement)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 2 AC_000159.1 (107892319..107901803, complement)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene zinc finger AN1-type containing 2B Neighboring gene ATP binding cassette subfamily B member 6 Neighboring gene ankyrin repeat and zinc finger domain containing 1 Neighboring gene galactosidase beta 1 like Neighboring gene serine/threonine kinase 16

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Autophagy - animal, organism-specific biosystem (from KEGG)
    Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
  • Autophagy - animal, conserved biosystem (from KEGG)
    Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
  • Autophagy - other, organism-specific biosystem (from KEGG)
    Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
  • Autophagy - other, conserved biosystem (from KEGG)
    Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
  • Cellular responses to stress, organism-specific biosystem (from REACTOME)
    Cellular responses to stress, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Macroautophagy, organism-specific biosystem (from REACTOME)
    Macroautophagy, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Mitophagy - animal, organism-specific biosystem (from KEGG)
    Mitophagy - animal, organism-specific biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...
  • Mitophagy - animal, conserved biosystem (from KEGG)
    Mitophagy - animal, conserved biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
late endosome membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
autophagy-related protein 9A
Names
APG9-like 1
ATG9 autophagy related 9 homolog A
autophagy protein 9

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034706.2NP_001029878.1  autophagy-related protein 9A

    See identical proteins and their annotated locations for NP_001029878.1

    Status: PROVISIONAL

    Source sequence(s)
    BC140511
    UniProtKB/Swiss-Prot
    Q3T904
    Related
    ENSBTAP00000027461.4, ENSBTAT00000027461.5
    Conserved Domains (1) summary
    pfam04109
    Location:179528
    APG9; Autophagy protein Apg9

RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    107170282..107179778 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005202865.4XP_005202922.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_005202922.1

    UniProtKB/Swiss-Prot
    Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179528
    APG9; Autophagy protein Apg9
  2. XM_010802366.3XP_010800668.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_010800668.1

    UniProtKB/Swiss-Prot
    Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179528
    APG9; Autophagy protein Apg9
  3. XM_024977141.1XP_024832909.1  autophagy-related protein 9A isoform X2

    Conserved Domains (1) summary
    pfam04109
    Location:161510
    APG9; Autophagy protein Apg9
  4. XM_024977137.1XP_024832905.1  autophagy-related protein 9A isoform X2

    Conserved Domains (1) summary
    pfam04109
    Location:161510
    APG9; Autophagy protein Apg9
  5. XM_015459234.1XP_015314720.1  autophagy-related protein 9A isoform X1

    UniProtKB/Swiss-Prot
    Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179528
    APG9; Autophagy protein Apg9
  6. XM_010802364.3XP_010800666.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_010800666.1

    UniProtKB/Swiss-Prot
    Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179528
    APG9; Autophagy protein Apg9
  7. XM_005202866.3XP_005202923.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_005202923.1

    UniProtKB/Swiss-Prot
    Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179528
    APG9; Autophagy protein Apg9
  8. XM_005202864.3XP_005202921.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_005202921.1

    UniProtKB/Swiss-Prot
    Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179528
    APG9; Autophagy protein Apg9
  9. XM_010802365.2XP_010800667.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_010800667.1

    UniProtKB/Swiss-Prot
    Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179528
    APG9; Autophagy protein Apg9
  10. XM_010802369.3XP_010800671.1  autophagy-related protein 9A isoform X3

    Conserved Domains (1) summary
    pfam04109
    Location:83432
    APG9; Autophagy protein Apg9
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