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SAFB scaffold attachment factor B [ Bos taurus (cattle) ]

Gene ID: 539785, updated on 28-Jun-2020

Summary

Gene symbol
SAFB
Gene description
scaffold attachment factor B
See related
Ensembl:ENSBTAG00000007875
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See SAFB in Genome Data Viewer
Location:
chromosome: 7
Exon count:
38
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 7 NC_037334.1 (18621604..18682683, complement)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 7 AC_000164.1 (19846024..19876686, complement)

Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene hydroxysteroid 11-beta dehydrogenase 1 like Neighboring gene mitochondrial contact site and cristae organizing system subunit 13 Neighboring gene uncharacterized LOC104969097 Neighboring gene uncharacterized LOC101907552 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene scaffold attachment factor B2 Neighboring gene 40S ribosomal protein S24-like

Genomic regions, transcripts, and products

General gene information

Markers

Homology

General protein information

Preferred Names
scaffold attachment factor B1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099715.1NP_001093185.1  scaffold attachment factor B1

    See identical proteins and their annotated locations for NP_001093185.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142189
    UniProtKB/TrEMBL
    A5PJP2
    Related
    ENSBTAP00000002344.6, ENSBTAT00000002344.6
    Conserved Domains (2) summary
    smart00513
    Location:3165
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
    cd12679
    Location:405480
    RRM_SAFB1_SAFB2; RNA recognition motif in scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), and similar proteins

RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037334.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    18621604..18682683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024994508.1XP_024850276.1  scaffold attachment factor B1 isoform X1

    Conserved Domains (5) summary
    cd12679
    Location:10981173
    RRM_SAFB1_SAFB2; RNA recognition motif in scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), and similar proteins
    pfam02037
    Location:3165
    SAP; SAP domain
    cl17169
    Location:403478
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26511
    Location:478912
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26761
    Location:7511080
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  2. XM_024994510.1XP_024850278.1  scaffold attachment factor B1 isoform X3

    Conserved Domains (5) summary
    cd12679
    Location:10981173
    RRM_SAFB1_SAFB2; RNA recognition motif in scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), and similar proteins
    pfam02037
    Location:3165
    SAP; SAP domain
    cl17169
    Location:403478
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26511
    Location:478912
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26761
    Location:7511080
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  3. XM_024994509.1XP_024850277.1  scaffold attachment factor B1 isoform X2

    Conserved Domains (5) summary
    cd12679
    Location:10981173
    RRM_SAFB1_SAFB2; RNA recognition motif in scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), and similar proteins
    pfam02037
    Location:3165
    SAP; SAP domain
    cl17169
    Location:403478
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26511
    Location:478912
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26761
    Location:7511080
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  4. XM_024994511.1XP_024850279.1  scaffold attachment factor B1 isoform X4

    Conserved Domains (4) summary
    cd12679
    Location:405480
    RRM_SAFB1_SAFB2; RNA recognition motif in scaffold attachment factor B1 (SAFB1), scaffold attachment factor B2 (SAFB2), and similar proteins
    pfam02037
    Location:3165
    SAP; SAP domain
    cl26511
    Location:457711
    Neuromodulin_N; Gap junction protein N-terminal region
    cl26761
    Location:101387
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
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