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CNTFR ciliary neurotrophic factor receptor [ Bos taurus (domestic cattle) ]

Gene ID: 539548, updated on 30-Jan-2025
Official Symbol
CNTFRprovided by VGNC
Official Full Name
ciliary neurotrophic factor receptorprovided by VGNC
Primary source
VGNC:VGNC:27535
See related
BGD:BT28359; EnsemblRapid:ENSBTAG00070029161
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See CNTFR in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (75920612..75958561, complement)

Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal intermediate chain 1 Neighboring gene 60S ribosomal protein L5 pseudogene Neighboring gene energy homeostasis associated Neighboring gene ribonuclease P/MRP subunit p25 like Neighboring gene transfer RNA tyrosine (anticodon AUA) Neighboring gene dynactin subunit 3

Genomic Sequence:
NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A molecular marker for the bovine ciliary neurotrophic factor receptor gene (CNTFR) maps to 8q21. Wigger G, et al. Anim Genet, 1998 Feb. PMID 9682455
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ciliary neurotrophic factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ciliary neurotrophic factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CNTFR-CLCF1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ciliary neurotrophic factor receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
ciliary neurotrophic factor receptor subunit alpha

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001278571.1 → NP_001265500.1  ciliary neurotrophic factor receptor subunit alpha precursor

    See identical proteins and their annotated locations for NP_001265500.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000008
    UniProtKB/TrEMBL
    A0A3Q1LQY1
    Conserved Domains (2) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    75920612..75958561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015472624.3 → XP_015328110.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LQY1
    Conserved Domains (2) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  2. XM_024995894.2 → XP_024851662.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LQY1
    Conserved Domains (2) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  3. XM_024995893.2 → XP_024851661.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LQY1
    Related
    ENSBTAP00070040348.1, ENSBTAT00070066288.1
    Conserved Domains (2) summary
    smart00408
    Location:39 → 96
    IGc2; Immunoglobulin C-2 Type
    cd00063
    Location:204 → 300
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  4. XM_059889192.1 → XP_059745175.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LQY1

  5. XM_059889193.1 → XP_059745176.1  ciliary neurotrophic factor receptor subunit alpha isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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