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SCAMP4 secretory carrier membrane protein 4 [ Bos taurus (domestic cattle) ]

Gene ID: 538819, updated on 30-Jan-2025
Official Symbol
SCAMP4provided by VGNC
Official Full Name
secretory carrier membrane protein 4provided by VGNC
Primary source
VGNC:VGNC:34318
See related
EnsemblRapid:ENSBTAG00070006008
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
all
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See SCAMP4 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (44220164..44237062)

Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 16 Neighboring gene abhydrolase domain containing 17A, depalmitoylase Neighboring gene adenosine deaminase tRNA specific 3 Neighboring gene casein kinase 1 gamma 2 Neighboring gene microRNA mir-6120 Neighboring gene BTB domain containing 2

Genomic Sequence:
NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Clone Names

  • MGC137831

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in recycling endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
secretory carrier-associated membrane protein 4

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024566.1 → NP_001019737.1  secretory carrier-associated membrane protein 4

    See identical proteins and their annotated locations for NP_001019737.1

    Status: PROVISIONAL

    Source sequence(s)
    BT021641
    UniProtKB/Swiss-Prot
    Q58DF6
    UniProtKB/TrEMBL
    A0AAA9S938
    Related
    ENSBTAP00070008005.1, ENSBTAT00070013773.1
    Conserved Domains (1) summary
    pfam04144
    Location:5 → 179
    SCAMP; SCAMP family

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    44220164..44237062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024994476.2 → XP_024850244.1  secretory carrier-associated membrane protein 4 isoform X1

    UniProtKB/Swiss-Prot
    Q58DF6
    UniProtKB/TrEMBL
    A0AAA9S938
    Conserved Domains (1) summary
    pfam04144
    Location:5 → 179
    SCAMP; SCAMP family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q58DF6.1 GenPept UniProtKB/Swiss-Prot:Q58DF6

Gene LinkOut

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Molecular Biology Databases
Research Materials