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Rab25 RAB25, member RAS oncogene family [ Mus musculus (house mouse) ]

Gene ID: 53868, updated on 9-Sep-2018

Summary

Official Symbol
Rab25provided by MGI
Official Full Name
RAB25, member RAS oncogene familyprovided by MGI
Primary source
MGI:MGI:1858203
See related
Ensembl:ENSMUSG00000008601 Vega:OTTMUSG00000027246
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AV012978
Expression
Biased expression in colon adult (RPKM 161.0), stomach adult (RPKM 130.1) and 10 other tissues See more
Orthologs

Genomic context

See Rab25 in Genome Data Viewer
Location:
3; 3 F1
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (88542029..88548279, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (88345951..88352201, complement)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 38618 Neighboring gene mex3 RNA binding family member A Neighboring gene microRNA 1905 Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 Neighboring gene ubiquilin 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
GTP binding IEA
Inferred from Electronic Annotation
more info
 
GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
myosin V binding ISO
Inferred from Sequence Orthology
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
Rab protein signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
epithelial cell morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of cell proliferation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of epithelial cell migration ISO
Inferred from Sequence Orthology
more info
 
protein transport IEA
Inferred from Electronic Annotation
more info
 
pseudopodium organization ISO
Inferred from Sequence Orthology
more info
 
regulation of vesicle-mediated transport ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cell projection IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle ISO
Inferred from Sequence Orthology
more info
 
endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
pseudopodium ISO
Inferred from Sequence Orthology
more info
 
recycling endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016899.4NP_058595.2  ras-related protein Rab-25

    See identical proteins and their annotated locations for NP_058595.2

    Status: PROVISIONAL

    Source sequence(s)
    AC145168
    Consensus CDS
    CCDS17477.1
    UniProtKB/Swiss-Prot
    Q9WTL2
    UniProtKB/TrEMBL
    Q0PD30
    Related
    ENSMUSP00000008745.6, OTTMUSP00000033887, ENSMUST00000008745.12, OTTMUST00000067368
    Conserved Domains (2) summary
    PLN03110
    Location:1212
    PLN03110; Rab GTPase; Provisional
    cd01868
    Location:11174
    Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

    Range
    88542029..88548279 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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