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Rwdd2b RWD domain containing 2B [ Mus musculus (house mouse) ]

Gene ID: 53858, updated on 30-Apr-2024

Summary

Official Symbol
Rwdd2bprovided by MGI
Official Full Name
RWD domain containing 2Bprovided by MGI
Primary source
MGI:MGI:1858215
See related
Ensembl:ENSMUSG00000041079 AllianceGenome:MGI:1858215
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ORF5
Summary
Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; hemolymphoid system gland; and musculoskeletal system. Orthologous to human RWDD2B (RWD domain containing 2B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in large intestine adult (RPKM 7.2), kidney adult (RPKM 3.6) and 27 other tissues See more
Orthologs
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Genomic context

See Rwdd2b in Genome Data Viewer
Location:
16 C3.3; 16 49.53 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (87230219..87237480, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (87433331..87440592, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4185 Neighboring gene N-6 adenine-specific DNA methyltransferase 1 (putative) Neighboring gene listerin E3 ubiquitin protein ligase 1 Neighboring gene predicted gene, 25896 Neighboring gene STARR-positive B cell enhancer ABC_E1186 Neighboring gene STARR-positive B cell enhancer ABC_E11624 Neighboring gene STARR-positive B cell enhancer ABC_E10922 Neighboring gene ubiquitin specific peptidase 16 Neighboring gene RIKEN cDNA B130034C11 gene Neighboring gene STARR-positive B cell enhancer ABC_E5556 Neighboring gene chaperonin containing TCP1 subunit 8

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
RWD domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016924.2NP_058620.2  RWD domain-containing protein 2B

    See identical proteins and their annotated locations for NP_058620.2

    Status: PROVISIONAL

    Source sequence(s)
    AK084966, BY094296
    Consensus CDS
    CCDS37383.1
    UniProtKB/Swiss-Prot
    Q99M03, Q9JLH4
    Related
    ENSMUSP00000049168.6, ENSMUST00000039101.12
    Conserved Domains (2) summary
    smart00591
    Location:13136
    RWD; domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain
    pfam06544
    Location:163222
    DUF1115; Protein of unknown function (DUF1115)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    87230219..87237480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)