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C11orf24 chromosome 11 open reading frame 24 [ Homo sapiens (human) ]

Gene ID: 53838, updated on 7-Jun-2020

Summary

Official Symbol
C11orf24provided by HGNC
Official Full Name
chromosome 11 open reading frame 24provided by HGNC
Primary source
HGNC:HGNC:1174
See related
Ensembl:ENSG00000171067 MIM:610880
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DM4E3
Expression
Ubiquitous expression in small intestine (RPKM 25.6), duodenum (RPKM 22.6) and 25 other tissues See more
Orthologs

Genomic context

See C11orf24 in Genome Data Viewer
Location:
11q13.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (68261338..68271973, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (68028803..68039469, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369362 Neighboring gene lysine methyltransferase 5B Neighboring gene uncharacterized LOC105369363 Neighboring gene LDL receptor related protein 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C11orf24

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001300913.2NP_001287842.1  uncharacterized protein C11orf24 isoform 2 precursor

    See identical proteins and their annotated locations for NP_001287842.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame segment compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AP002813, BC011765, BI862360, BX384793, DB471655
    Consensus CDS
    CCDS73338.1
    UniProtKB/Swiss-Prot
    Q96F05
    UniProtKB/TrEMBL
    E9PRU5
    Related
    ENSP00000434144.1, ENST00000533310.5
  2. NM_022338.4NP_071733.1  uncharacterized protein C11orf24 isoform 1 precursor

    See identical proteins and their annotated locations for NP_071733.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AF264781, BC011765, BG701401
    Consensus CDS
    CCDS8180.1
    UniProtKB/Swiss-Prot
    Q96F05
    UniProtKB/TrEMBL
    A0A024R5K9
    Related
    ENSP00000307264.6, ENST00000304271.11
    Conserved Domains (1) summary
    PHA03247
    Location:133391
    PHA03247; large tegument protein UL36; Provisional

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    68261338..68271973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011545103.3XP_011543405.1  uncharacterized protein C11orf24 isoform X2

    Conserved Domains (1) summary
    PHA03247
    Location:101359
    PHA03247; large tegument protein UL36; Provisional
  2. XM_005274053.4XP_005274110.1  uncharacterized protein C11orf24 isoform X1

    See identical proteins and their annotated locations for XP_005274110.1

    UniProtKB/Swiss-Prot
    Q96F05
    UniProtKB/TrEMBL
    A0A024R5K9
    Conserved Domains (1) summary
    PHA03247
    Location:133391
    PHA03247; large tegument protein UL36; Provisional
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