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SPATA16 spermatogenesis associated 16 [ Bos taurus (domestic cattle) ]

Gene ID: 538046, updated on 30-Jan-2025
Official Symbol
SPATA16provided by VGNC
Official Full Name
spermatogenesis associated 16provided by VGNC
Primary source
VGNC:VGNC:35175
See related
EnsemblRapid:ENSBTAG00070001770
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
SCAND3
Orthologs
human mouse all
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See SPATA16 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (94320195..94597863)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene neuroligin 1 Neighboring gene uncharacterized LOC132345688 Neighboring gene peptidyl-prolyl cis-trans isomerase A-like Neighboring gene uncharacterized LOC112447725 Neighboring gene histone H2B type 1-C/E/F/G/I Neighboring gene epithelial cell transforming 2 Neighboring gene neutral cholesterol ester hydrolase 1

Genomic Sequence:
NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
spermatogenesis-associated protein 16
Names
SCAN domain containing 3

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    94320195..94597863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024995427.2 → XP_024851195.1  spermatogenesis-associated protein 16 isoform X1

    UniProtKB/TrEMBL
    F1MN96
    Conserved Domains (2) summary
    sd00006
    Location:179 → 227
    TPR; TPR repeat [structural motif]
    pfam15015
    Location:1 → 538
    NYD-SP12_N; Spermatogenesis-associated, N-terminal

  2. XM_002684936.7 → XP_002684982.3  spermatogenesis-associated protein 16 isoform X1

    See identical proteins and their annotated locations for XP_002684982.3

    UniProtKB/TrEMBL
    F1MN96
    Related
    ENSBTAP00070002285.1, ENSBTAT00070004093.1
    Conserved Domains (2) summary
    sd00006
    Location:179 → 227
    TPR; TPR repeat [structural motif]
    pfam15015
    Location:1 → 538
    NYD-SP12_N; Spermatogenesis-associated, N-terminal

  3. XM_005201702.5 → XP_005201759.1  spermatogenesis-associated protein 16 isoform X2

    See identical proteins and their annotated locations for XP_005201759.1

    Conserved Domains (2) summary
    sd00006
    Location:179 → 227
    TPR; TPR repeat [structural motif]
    pfam15015
    Location:1 → 379
    NYD-SP12_N; Spermatogenesis-associated, N-terminal
Nucleotide Protein Strain
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