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CDON cell adhesion associated, oncogene regulated [ Bos taurus (cattle) ]

Gene ID: 536011, updated on 3-Apr-2024

Summary

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Official Symbol
CDONprovided by VGNC
Official Full Name
cell adhesion associated, oncogene regulatedprovided by VGNC
Primary source
VGNC:VGNC:27151
See related
BGD:BT26989; Ensembl:ENSBTAG00000009315
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 29
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (29320588..29419970, complement)

Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 25 Neighboring gene V-set and immunoglobulin domain containing 10 like 2 Neighboring gene uncharacterized LOC132344187 Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC112444896

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell adhesion molecule-related/down-regulated by oncogenes
Names
Cdon homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192870.2 → NP_001179799.2  cell adhesion molecule-related/down-regulated by oncogenes precursor

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000029
    UniProtKB/TrEMBL
    A0A3Q1LN28, E1BHG3
    Related
    ENSBTAP00000012270.5, ENSBTAT00000012270.7
    Conserved Domains (5) summary
    cd00063
    Location:714 → 804
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:313 → 397
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:584 → 660
    fn3; Fibronectin type III domain
    pfam13927
    Location:404 → 501
    Ig_3; Immunoglobulin domain
    cl11960
    Location:231 → 308
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    29320588..29419970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059882976.1 → XP_059738959.1  cell adhesion molecule-related/down-regulated by oncogenes isoform X1

    UniProtKB/TrEMBL
    E1BHG3

  2. XM_005226821.5 → XP_005226878.1  cell adhesion molecule-related/down-regulated by oncogenes isoform X1

    See identical proteins and their annotated locations for XP_005226878.1

    UniProtKB/TrEMBL
    A0A3Q1LN28, E1BHG3
    Conserved Domains (5) summary
    cd00063
    Location:714 → 804
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:313 → 397
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:584 → 660
    fn3; Fibronectin type III domain
    pfam13927
    Location:404 → 501
    Ig_3; Immunoglobulin domain
    cl11960
    Location:231 → 308
    Ig; Immunoglobulin domain

  3. XM_024987224.2 → XP_024842992.1  cell adhesion molecule-related/down-regulated by oncogenes isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LN28, E1BHG3
    Conserved Domains (5) summary
    cd00063
    Location:714 → 804
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:313 → 397
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:584 → 660
    fn3; Fibronectin type III domain
    pfam13927
    Location:404 → 501
    Ig_3; Immunoglobulin domain
    cl11960
    Location:231 → 308
    Ig; Immunoglobulin domain

  4. XM_059882977.1 → XP_059738960.1  cell adhesion molecule-related/down-regulated by oncogenes isoform X1

    UniProtKB/TrEMBL
    E1BHG3

  5. XM_010820942.4 → XP_010819244.1  cell adhesion molecule-related/down-regulated by oncogenes isoform X1

    See identical proteins and their annotated locations for XP_010819244.1

    UniProtKB/TrEMBL
    A0A3Q1LN28, E1BHG3
    Conserved Domains (5) summary
    cd00063
    Location:714 → 804
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:313 → 397
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:584 → 660
    fn3; Fibronectin type III domain
    pfam13927
    Location:404 → 501
    Ig_3; Immunoglobulin domain
    cl11960
    Location:231 → 308
    Ig; Immunoglobulin domain

  6. XM_059882978.1 → XP_059738961.1  cell adhesion molecule-related/down-regulated by oncogenes isoform X2

    Related
    ENSBTAP00000074319.2, ENSBTAT00000074996.2

RNA

  1. XR_240630.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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