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RERE arginine-glutamic acid dipeptide repeats [ Bos taurus (domestic cattle) ]

Gene ID: 535394, updated on 30-Jan-2025
Official Symbol
REREprovided by VGNC
Official Full Name
arginine-glutamic acid dipeptide repeatsprovided by VGNC
Primary source
VGNC:VGNC:33872
See related
BGD:BT11951; EnsemblRapid:ENSBTAG00070018127
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See RERE in Genome Data Viewer
Location:
chromosome: 16
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (44615915..45030951)

Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene enolase 1 Neighboring gene L-lactate dehydrogenase B chain-like Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene microRNA mir-2285ck Neighboring gene uncharacterized LOC104974445 Neighboring gene solute carrier family 45 member 1 Neighboring gene chromosome 20 open reading frame 106 homolog

Genomic Sequence:
NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
arginine-glutamic acid dipeptide repeats protein

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    44615915..45030951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059875727.1 → XP_059731710.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M1Q8, F1MGR3

  2. XM_059875728.1 → XP_059731711.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M1Q8, F1MGR3

  3. XM_002694049.6 → XP_002694095.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    See identical proteins and their annotated locations for XP_002694095.1

    UniProtKB/TrEMBL
    A0A3Q1M1Q8, F1MGR3
    Related
    ENSBTAP00070024438.1, ENSBTAT00070040955.1
    Conserved Domains (7) summary
    smart00717
    Location:394 → 441
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd11661
    Location:395 → 440
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:503 → 552
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:506 → 560
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    cd04709
    Location:102 → 307
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:286 → 336
    ELM2; ELM2 domain
    pfam03154
    Location:568 → 1544
    Atrophin-1; Atrophin-1 family

  4. XM_005217005.5 → XP_005217062.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    See identical proteins and their annotated locations for XP_005217062.1

    UniProtKB/TrEMBL
    A0A3Q1M1Q8, F1MGR3
    Related
    ENSBTAP00070024423.1, ENSBTAT00070040941.1
    Conserved Domains (7) summary
    smart00717
    Location:394 → 441
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd11661
    Location:395 → 440
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:503 → 552
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:506 → 560
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    cd04709
    Location:102 → 307
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:286 → 336
    ELM2; ELM2 domain
    pfam03154
    Location:568 → 1544
    Atrophin-1; Atrophin-1 family

  5. XM_024976744.2 → XP_024832512.1  arginine-glutamic acid dipeptide repeats protein isoform X2

    UniProtKB/TrEMBL
    A0A3Q1M1Q8
    Conserved Domains (5) summary
    cd11661
    Location:368 → 407
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:470 → 519
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 307
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:286 → 336
    ELM2; ELM2 domain
    cl26464
    Location:535 → 1511
    Atrophin-1; Atrophin-1 family

  6. XM_024976745.2 → XP_024832513.1  arginine-glutamic acid dipeptide repeats protein isoform X3

    UniProtKB/TrEMBL
    A0A3Q1M1Q8, A0A3Q1MNM1
    Related
    ENSBTAP00070024443.1, ENSBTAT00070040964.1
    Conserved Domains (5) summary
    cd11661
    Location:353 → 398
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:461 → 510
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 265
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:244 → 294
    ELM2; ELM2 domain
    cl26464
    Location:526 → 1502
    Atrophin-1; Atrophin-1 family

  7. XM_059875729.1 → XP_059731712.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A3Q1M1Q8, F1MGR3

  8. XM_005217008.5 → XP_005217065.1  arginine-glutamic acid dipeptide repeats protein isoform X4

    See identical proteins and their annotated locations for XP_005217065.1

    UniProtKB/TrEMBL
    A0A3Q1M1Q8
    Conserved Domains (4) summary
    cd11661
    Location:127 → 172
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:235 → 284
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    pfam01448
    Location:18 → 68
    ELM2; ELM2 domain
    cl26464
    Location:300 → 1276
    Atrophin-1; Atrophin-1 family

  9. XM_024976746.2 → XP_024832514.1  arginine-glutamic acid dipeptide repeats protein isoform X5

    Conserved Domains (3) summary
    cd11661
    Location:44 → 82
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:145 → 194
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cl26464
    Location:210 → 1186
    Atrophin-1; Atrophin-1 family

  10. XM_024976747.2 → XP_024832515.1  arginine-glutamic acid dipeptide repeats protein isoform X6

    Conserved Domains (1) summary
    cl26464
    Location:14 → 990
    Atrophin-1; Atrophin-1 family

  11. XM_024976748.2 → XP_024832516.1  arginine-glutamic acid dipeptide repeats protein isoform X6

    Conserved Domains (1) summary
    cl26464
    Location:14 → 990
    Atrophin-1; Atrophin-1 family
Nucleotide Protein Strain
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