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VPS50 VPS50 subunit of EARP/GARPII complex [ Bos taurus (domestic cattle) ]

Gene ID: 535248, updated on 5-Sep-2025
Official Symbol
VPS50provided by VGNC
Official Full Name
VPS50 subunit of EARP/GARPII complexprovided by VGNC
Primary source
VGNC:VGNC:36826
See related
BGD:BT17689; EnsemblRapid:ENSBTAG00070001194
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
CCDC132
Orthologs
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See VPS50 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (10600841..10732875)

Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain containing 9 Neighboring gene HEPACAM family member 2 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like Neighboring gene calcitonin receptor Neighboring gene microRNA mir-653 Neighboring gene microRNA mir-489

Genomic Sequence:
NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly
  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Markers

Clone Names

  • MGC159591

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in endocytic recycling IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of EARP complex IEA
Inferred from Electronic Annotation
more info
PubMed 
Preferred Names
syndetin
Names
VPS50, EARP/GARPII complex subunit
coiled-coil domain containing 132

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105413.2NP_001098883.1  syndetin

    See identical proteins and their annotated locations for NP_001098883.1

    Status: PROVISIONAL

    Source sequence(s)
    BC153221
    UniProtKB/TrEMBL
    A0A3Q1N4A1, A7Z023
    Related
    ENSBTAP00070001573.1, ENSBTAT00070002709.1
    Conserved Domains (2) summary
    pfam10474
    Location:726957
    DUF2451; Protein of unknown function C-terminus (DUF2451)
    pfam10475
    Location:54345
    DUF2450; Protein of unknown function N-terminal domain (DUF2450)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    10600841..10732875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)