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ARID4B AT-rich interaction domain 4B [ Bos taurus (domestic cattle) ]

Gene ID: 534612, updated on 30-Jan-2025
Official Symbol
ARID4Bprovided by VGNC
Official Full Name
AT-rich interaction domain 4Bprovided by VGNC
Primary source
VGNC:VGNC:26130
See related
BGD:BT25658; EnsemblRapid:ENSBTAG00070016170
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See ARID4B in Genome Data Viewer
Location:
chromosome: 28
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (7927929..8066443, complement)

Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene uncharacterized LOC132344122 Neighboring gene RNA binding motif protein 34 Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene tubulin folding cofactor E Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2

Genomic Sequence:
NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
AT-rich interactive domain-containing protein 4B
Names
AT rich interactive domain 4B (RBP1-like)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001206133.3 → NP_001193062.1  AT-rich interactive domain-containing protein 4B

    See identical proteins and their annotated locations for NP_001193062.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000028
    UniProtKB/TrEMBL
    A0A3Q1MC43, A0AAA9TBK4
    Related
    ENSBTAP00070021362.1, ENSBTAT00070036323.1
    Conserved Domains (5) summary
    pfam05539
    Location:965 → 1126
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    smart01014
    Location:311 → 394
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:173 → 262
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:569 → 622
    Tudor-knot; RNA binding activity-knot of a chromodomain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    7927929..8066443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024986703.2 → XP_024842471.1  AT-rich interactive domain-containing protein 4B isoform X4

    UniProtKB/TrEMBL
    A0A3Q1MC43, A0AAA9TBK4
    Conserved Domains (5) summary
    pfam05539
    Location:965 → 1126
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    smart01014
    Location:311 → 394
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:173 → 262
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:569 → 622
    Tudor-knot; RNA binding activity-knot of a chromodomain

  2. XM_010820426.4 → XP_010818728.1  AT-rich interactive domain-containing protein 4B isoform X3

    See identical proteins and their annotated locations for XP_010818728.1

    UniProtKB/TrEMBL
    A0AAA9TBK4
    Conserved Domains (4) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    smart01014
    Location:311 → 394
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:170 → 262
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:575 → 628
    Tudor-knot; RNA binding activity-knot of a chromodomain

  3. XM_010820428.4 → XP_010818730.1  AT-rich interactive domain-containing protein 4B isoform X8

    UniProtKB/TrEMBL
    A0AAA9TBK4, F1MNB5
    Related
    ENSBTAP00070021372.1, ENSBTAT00070036340.1
    Conserved Domains (3) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    smart01014
    Location:311 → 394
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:170 → 262
    RBB1NT; RBB1NT (NUC162) domain

  4. XM_024986705.2 → XP_024842473.1  AT-rich interactive domain-containing protein 4B isoform X6

    UniProtKB/TrEMBL
    A0AAA9TBK4
    Conserved Domains (4) summary
    pfam05539
    Location:929 → 1090
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    smart01014
    Location:311 → 394
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:173 → 262
    RBB1NT; RBB1NT (NUC162) domain

  5. XM_010820425.4 → XP_010818727.1  AT-rich interactive domain-containing protein 4B isoform X3

    See identical proteins and their annotated locations for XP_010818727.1

    UniProtKB/TrEMBL
    A0AAA9TBK4
    Conserved Domains (4) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    smart01014
    Location:311 → 394
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:170 → 262
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:575 → 628
    Tudor-knot; RNA binding activity-knot of a chromodomain

  6. XM_024986704.2 → XP_024842472.1  AT-rich interactive domain-containing protein 4B isoform X5

    UniProtKB/TrEMBL
    A0AAA9TBK4
    Conserved Domains (4) summary
    pfam05539
    Location:943 → 1104
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:66 → 121
    TUDOR; Tudor domain
    smart01014
    Location:319 → 402
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:181 → 270
    RBB1NT; RBB1NT (NUC162) domain

  7. XM_024986701.2 → XP_024842469.1  AT-rich interactive domain-containing protein 4B isoform X1

    UniProtKB/TrEMBL
    A0AAA9TBK4
    Conserved Domains (5) summary
    pfam05539
    Location:979 → 1140
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:66 → 121
    TUDOR; Tudor domain
    smart01014
    Location:319 → 402
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:181 → 270
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:583 → 636
    Tudor-knot; RNA binding activity-knot of a chromodomain

  8. XM_024986702.2 → XP_024842470.1  AT-rich interactive domain-containing protein 4B isoform X2

    UniProtKB/TrEMBL
    A0AAA9TBK4
    Conserved Domains (5) summary
    pfam05539
    Location:973 → 1134
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:66 → 121
    TUDOR; Tudor domain
    smart01014
    Location:319 → 402
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:181 → 270
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:577 → 630
    Tudor-knot; RNA binding activity-knot of a chromodomain

  9. XM_024986706.2 → XP_024842474.1  AT-rich interactive domain-containing protein 4B isoform X7

    UniProtKB/TrEMBL
    A0AAA9TBK4
    Conserved Domains (4) summary
    pfam05539
    Location:889 → 1050
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:66 → 121
    TUDOR; Tudor domain
    smart01014
    Location:319 → 402
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:181 → 270
    RBB1NT; RBB1NT (NUC162) domain

  10. XM_024986707.2 → XP_024842475.1  AT-rich interactive domain-containing protein 4B isoform X9

    UniProtKB/TrEMBL
    A0AAA9TBK4
    Conserved Domains (5) summary
    pfam05539
    Location:979 → 1140
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:66 → 121
    TUDOR; Tudor domain
    smart01014
    Location:319 → 402
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:181 → 270
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:583 → 636
    Tudor-knot; RNA binding activity-knot of a chromodomain

  11. XM_024986708.2 → XP_024842476.1  AT-rich interactive domain-containing protein 4B isoform X10

    UniProtKB/TrEMBL
    A0AAA9TBK4
    Conserved Domains (5) summary
    pfam05539
    Location:979 → 1140
    Pneumo_att_G; Pneumovirinae attachment membrane glycoprotein G
    smart00333
    Location:66 → 121
    TUDOR; Tudor domain
    smart01014
    Location:319 → 402
    ARID; ARID/BRIGHT DNA binding domain
    pfam08169
    Location:181 → 270
    RBB1NT; RBB1NT (NUC162) domain
    pfam11717
    Location:583 → 636
    Tudor-knot; RNA binding activity-knot of a chromodomain
Nucleotide Protein Strain
Heading Accession and Version

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