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TFDP1 transcription factor Dp-1 [ Bos taurus (cattle) ]

Gene ID: 534579, updated on 2-Oct-2018

Summary

Gene symbol
TFDP1
Gene description
transcription factor Dp-1
See related
BGD:BT25225; Ensembl:ENSBTAG00000019645
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs

Genomic context

See TFDP1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 12 NC_037339.1 (86721172..86738847)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 12 AC_000169.1 (90738301..90754997)

Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene defective in cullin neddylation 1 domain containing 2 Neighboring gene transmembrane and coiled-coil domains 3 Neighboring gene ATPase H+/K+ transporting subunit beta Neighboring gene G protein-coupled receptor kinase 1

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 
transcription factor binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
anoikis IEA
Inferred from Electronic Annotation
more info
 
cell cycle IEA
Inferred from Electronic Annotation
more info
 
epidermis development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of fat cell proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
regulation of DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
RNA polymerase II transcription factor complex IEA
Inferred from Electronic Annotation
more info
 
cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
cytosol IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076029.1NP_001069497.1  transcription factor Dp-1

    See identical proteins and their annotated locations for NP_001069497.1

    Status: PROVISIONAL

    Source sequence(s)
    BC118103
    UniProtKB/Swiss-Prot
    Q17QZ4
    Related
    ENSBTAP00000026175.5, ENSBTAT00000026175.5
    Conserved Domains (3) summary
    cd14458
    Location:198244
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:112193
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:200338
    DP; Transcription factor DP

RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037339.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    86721172..86738847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024999909.1XP_024855677.1  transcription factor Dp-1 isoform X2

    Conserved Domains (3) summary
    cd14458
    Location:140186
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:54135
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:142280
    DP; Transcription factor DP
  2. XM_024999908.1XP_024855676.1  transcription factor Dp-1 isoform X1

    Conserved Domains (3) summary
    cd14458
    Location:198244
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:112193
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:200338
    DP; Transcription factor DP
  3. XM_024999906.1XP_024855674.1  transcription factor Dp-1 isoform X1

    Conserved Domains (3) summary
    cd14458
    Location:198244
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:112193
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:200338
    DP; Transcription factor DP
  4. XM_024999912.1XP_024855680.1  transcription factor Dp-1 isoform X2

    Conserved Domains (3) summary
    cd14458
    Location:140186
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:54135
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:142280
    DP; Transcription factor DP
  5. XM_024999910.1XP_024855678.1  transcription factor Dp-1 isoform X2

    Conserved Domains (3) summary
    cd14458
    Location:140186
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:54135
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:142280
    DP; Transcription factor DP
  6. XM_024999905.1XP_024855673.1  transcription factor Dp-1 isoform X1

    Conserved Domains (3) summary
    cd14458
    Location:198244
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:112193
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:200338
    DP; Transcription factor DP
  7. XM_024999911.1XP_024855679.1  transcription factor Dp-1 isoform X2

    Conserved Domains (3) summary
    cd14458
    Location:140186
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:54135
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:142280
    DP; Transcription factor DP
  8. XM_024999907.1XP_024855675.1  transcription factor Dp-1 isoform X1

    Conserved Domains (3) summary
    cd14458
    Location:198244
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:112193
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:200338
    DP; Transcription factor DP
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