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HGTX [ Drosophila melanogaster (fruit fly) ]

Gene ID: 53446, updated on 28-Aug-2021

Summary

Official Symbol
HGTXprovided by FlyBase
Primary source
FLYBASE:FBgn0040318
Locus tag
Dmel_CG13475
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG13475; CG4745; Dmel\CG13475; dNkx6; Nk6; nkx6; Nkx6
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Genomic context

See HGTX in Genome Data Viewer
Location:
70E3-70E3; 3-42 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.32 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (14583222..14599540, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (14576322..14592640, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR44843 Neighboring gene uncharacterized protein Neighboring gene Leucokinin Neighboring gene uncharacterized protein Neighboring gene shade Neighboring gene uncharacterized protein Neighboring gene RecQ5 helicase

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
HGTX
Names
CG13475-PA
CG13475-PC
HGTX-PA
HGTX-PC
Nk6 homeobox
NP_001368954.1
  • non-AUG (AAG) translation initiation

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    14583222..14599540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001382022.1NP_001368954.1  HGTX, isoform C [Drosophila melanogaster]

    Status: REVIEWED

    Related
    FBpp0428200, FBtr0479865
    Conserved Domains (2) summary
    COG5422
    Location:179388
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    pfam00046
    Location:469523
    Homeobox; Homeobox domain
  2. NM_144357.3NP_652614.1  HGTX, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_652614.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9NHP8
    Related
    FBpp0075463, FBtr0075720
    Conserved Domains (1) summary
    pfam00046
    Location:395448
    Homeobox; Homeobox domain
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