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NECTIN3 nectin cell adhesion molecule 3 [ Bos taurus (cattle) ]

Gene ID: 534360, updated on 5-Mar-2024

Summary

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Official Symbol
NECTIN3provided by VGNC
Official Full Name
nectin cell adhesion molecule 3provided by VGNC
Primary source
VGNC:VGNC:106835
See related
BGD:BT16797; Ensembl:ENSBTAG00000013769
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (55893427..56039495)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase SETMAR-like Neighboring gene uncharacterized LOC132346266 Neighboring gene CD96 molecule Neighboring gene zinc finger BED-type containing 2 Neighboring gene uncharacterized LOC104970843

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in symbiont entry into host cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nectin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    55893427..56039495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024994242.2 → XP_024850010.1  nectin-3 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LH04, A0A3Q1MU11
    Related
    ENSBTAP00000057887.1, ENSBTAT00000083965.2
    Conserved Domains (3) summary
    cd05887
    Location:72 → 167
    Ig1_Nectin-3_like; First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins
    smart00410
    Location:287 → 348
    IG_like; Immunoglobulin like
    cl11960
    Location:170 → 265
    Ig; Immunoglobulin domain

  2. XM_024994248.2 → XP_024850016.1  nectin-3 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LH04, A0A3Q1MU11
    Related
    ENSBTAP00000073972.1, ENSBTAT00000076938.2
    Conserved Domains (3) summary
    cd05887
    Location:72 → 167
    Ig1_Nectin-3_like; First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins
    smart00410
    Location:287 → 348
    IG_like; Immunoglobulin like
    cl11960
    Location:170 → 265
    Ig; Immunoglobulin domain

  3. XM_024994235.2 → XP_024850003.1  nectin-3 isoform X1

    UniProtKB/TrEMBL
    F1MUF6
    Related
    ENSBTAP00000090196.1, ENSBTAT00000132201.1
    Conserved Domains (4) summary
    cd05887
    Location:72 → 167
    Ig1_Nectin-3_like; First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins
    cd12087
    Location:403 → 432
    TM_EGFR-like; Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine Kinases
    smart00410
    Location:287 → 348
    IG_like; Immunoglobulin like
    cl11960
    Location:170 → 265
    Ig; Immunoglobulin domain

RNA

  1. XR_009495017.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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