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DDX50 DExD-box helicase 50 [ Bos taurus (domestic cattle) ]

Gene ID: 534331, updated on 30-Jan-2025
Official Symbol
DDX50provided by VGNC
Official Full Name
DExD-box helicase 50provided by VGNC
Primary source
VGNC:VGNC:27973
See related
BGD:BT11984; EnsemblRapid:ENSBTAG00070029766
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See DDX50 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (25178297..25211518)

Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD98 Neighboring gene cell division cycle and apoptosis regulator 1 Neighboring gene storkhead box 1 Neighboring gene RNA N6-adenosine-methyltransferase METTL16-like Neighboring gene DExD-box helicase 21 Neighboring gene kinesin family binding protein

Genomic Sequence:
NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
ATP-dependent RNA helicase DDX50
Names
DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
DEAD-box helicase 50
NP_001192982.1
XP_005226487.1
XP_010818897.1
XP_059738534.1
XP_059738535.1
XP_059738536.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001206053.2 → NP_001192982.1  ATP-dependent RNA helicase DDX50

    See identical proteins and their annotated locations for NP_001192982.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000028
    UniProtKB/TrEMBL
    A0A3Q1MFA6, F1MMK3
    Related
    ENSBTAP00070041231.1, ENSBTAT00070067527.1
    Conserved Domains (2) summary
    COG0513
    Location:120 → 611
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:568 → 659
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    25178297..25211518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005226430.5 → XP_005226487.1  ATP-dependent RNA helicase DDX50 isoform X1

    See identical proteins and their annotated locations for XP_005226487.1

    UniProtKB/TrEMBL
    A0A3Q1MFA6
    Related
    ENSBTAP00070041218.1, ENSBTAT00070067502.1
    Conserved Domains (2) summary
    COG0513
    Location:55 → 546
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:503 → 594
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins

  2. XM_059882552.1 → XP_059738535.1  ATP-dependent RNA helicase DDX50 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1MFA6

  3. XM_059882553.1 → XP_059738536.1  ATP-dependent RNA helicase DDX50 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1MFA6

  4. XM_059882551.1 → XP_059738534.1  ATP-dependent RNA helicase DDX50 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1MFA6

  5. XM_010820595.4 → XP_010818897.1  ATP-dependent RNA helicase DDX50 isoform X1

    See identical proteins and their annotated locations for XP_010818897.1

    UniProtKB/TrEMBL
    A0A3Q1MFA6
    Conserved Domains (2) summary
    COG0513
    Location:55 → 546
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:503 → 594
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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