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RARA retinoic acid receptor alpha [ Bos taurus (domestic cattle) ]

Gene ID: 534280, updated on 30-Jan-2025
Official Symbol
RARAprovided by VGNC
Official Full Name
retinoic acid receptor alphaprovided by VGNC
Primary source
VGNC:VGNC:33729
See related
BGD:BT16928; EnsemblRapid:ENSBTAG00070027666
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See RARA in Genome Data Viewer
Location:
chromosome: 19
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (40551174..40595283)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene WAS/WASL interacting protein family member 2 Neighboring gene cell division cycle 6 Neighboring gene gap junction protein delta 3 Neighboring gene large ribosomal subunit protein uL15-like

Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. Regulation of mammary gland sensitivity to thyroid hormones during the transition from pregnancy to lactation. Capuco AV, et al. Exp Biol Med (Maywood), 2008 Oct. PMID 18641053
  2. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear glucocorticoid receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to corticotropin-releasing hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
retinoic acid receptor alpha
Names
RAR-alpha

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014942.4 → NP_001014942.2  retinoic acid receptor alpha

    See identical proteins and their annotated locations for NP_001014942.2

    Status: VALIDATED

    Source sequence(s)
    NKLS02000019
    UniProtKB/TrEMBL
    A0A3Q1LPI3, F1MWQ3
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    40551174..40595283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059878128.1 → XP_059734111.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LPI3, F1MWQ3

  2. XM_059878129.1 → XP_059734112.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LPI3, F1MWQ3

  3. XM_005220738.5 → XP_005220795.1  retinoic acid receptor alpha isoform X1

    See identical proteins and their annotated locations for XP_005220795.1

    UniProtKB/TrEMBL
    A0A3Q1LPI3, F1MWQ3
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  4. XM_059878130.1 → XP_059734113.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LPI3, F1MWQ3

  5. XM_059878127.1 → XP_059734110.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LPI3, F1MWQ3

  6. XM_024980268.2 → XP_024836036.1  retinoic acid receptor alpha isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LPI3, F1MWQ3
    Related
    ENSBTAP00070037820.1, ENSBTAT00070063052.1
    Conserved Domains (2) summary
    cd06937
    Location:186 → 416
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:82 → 166
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  7. XM_059878131.1 → XP_059734114.1  retinoic acid receptor alpha isoform X3

    UniProtKB/TrEMBL
    A0A3Q1LPI3
    Related
    ENSBTAP00070037764.1, ENSBTAT00070062981.1

  8. XM_024980270.2 → XP_024836038.1  retinoic acid receptor alpha isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LPI3, A0A3Q1M468
    Related
    ENSBTAP00070037738.1, ENSBTAT00070062950.1
    Conserved Domains (2) summary
    cd06937
    Location:183 → 413
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:79 → 163
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers

  9. XM_005220739.5 → XP_005220796.1  retinoic acid receptor alpha isoform X4

    See identical proteins and their annotated locations for XP_005220796.1

    UniProtKB/TrEMBL
    A0A3Q1LPI3
    Conserved Domains (2) summary
    cd06937
    Location:133 → 363
    NR_LBD_RAR; The ligand binding domain (LBD) of retinoic acid receptor (RAR), a members of the nuclear receptor superfamily
    cd06964
    Location:29 → 113
    NR_DBD_RAR; DNA-binding domain of retinoic acid receptor (RAR) is composed of two C4-type zinc fingers
Nucleotide Protein Strain
Heading Accession and Version

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