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SCN9A sodium voltage-gated channel alpha subunit 9 [ Bos taurus (cattle) ]

Gene ID: 533065, updated on 27-Aug-2018

Summary

Official Symbol
SCN9Aprovided by VGNC
Official Full Name
sodium voltage-gated channel alpha subunit 9provided by VGNC
Primary source
VGNC:VGNC:34355
See related
BGD:BT23833; Ensembl:ENSBTAG00000002425
Gene type
protein coding
RefSeq status
INFERRED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs

Genomic context

See SCN9A in Genome Data Viewer
Location:
chromosome: 2
Exon count:
28
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 2 NC_037329.1 (29924442..30089661)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 2 AC_000159.1 (30020943..30187710)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene sodium voltage-gated channel alpha subunit 7 Neighboring gene uncharacterized LOC104971177 Neighboring gene uncharacterized LOC112442560 Neighboring gene regulator of microtubule dynamics protein 1 Neighboring gene U6 spliceosomal RNA Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene tetratricopeptide repeat domain 21B

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Taste transduction, organism-specific biosystem (from KEGG)
    Taste transduction, organism-specific biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...
  • Taste transduction, conserved biosystem (from KEGG)
    Taste transduction, conserved biosystemFive basic tastes are recognized by humans and most other animals - bitter, sweet, sour, salty and umami. In vertebrates, taste stimuli are detected by taste receptor cells (TRCs). At least three dis...

General gene information

Markers

Homology

General protein information

Preferred Names
sodium channel protein type 9 subunit alpha
Names
sodium channel, voltage-gated, type IX, alpha subunit

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110787.3NP_001104257.3  sodium channel protein type 9 subunit alpha

    Status: INFERRED

    Source sequence(s)
    NKLS02000002
    Related
    ENSBTAP00000003146.5, ENSBTAT00000003146.5
    Conserved Domains (5) summary
    cd13433
    Location:14571509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11901465
    Ion_trans; Ion transport protein
    pfam06512
    Location:9811186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:487680
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17731836
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    29924442..30089661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024975630.1XP_024831398.1  sodium channel protein type 9 subunit alpha isoform X4

    Conserved Domains (5) summary
    cd13433
    Location:14571509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11901465
    Ion_trans; Ion transport protein
    pfam06512
    Location:9811186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:487680
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17731836
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  2. XM_005202453.4XP_005202510.2  sodium channel protein type 9 subunit alpha isoform X1

    Conserved Domains (5) summary
    cd13433
    Location:14571509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11901465
    Ion_trans; Ion transport protein
    pfam06512
    Location:9811186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:487680
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17731836
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  3. XM_024975629.1XP_024831397.1  sodium channel protein type 9 subunit alpha isoform X3

    Conserved Domains (5) summary
    cd13433
    Location:13991451
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:14551711
    Ion_trans; Ion transport protein
    pfam06512
    Location:9811186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:487680
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17151778
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
  4. XM_024975627.1XP_024831395.1  sodium channel protein type 9 subunit alpha isoform X2

    Conserved Domains (5) summary
    cd13433
    Location:14461498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:11791454
    Ion_trans; Ion transport protein
    pfam06512
    Location:9701175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:487669
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:17621825
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
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