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WHRN whirlin [ Bos taurus (cattle) ]

Gene ID: 533033, updated on 5-Mar-2024

Summary

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Official Symbol
WHRNprovided by VGNC
Official Full Name
whirlinprovided by VGNC
Primary source
VGNC:VGNC:36937
See related
Ensembl:ENSBTAG00000010107
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (103621005..103712995, complement)

Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene orosomucoid 1 Neighboring gene AT-hook transcription factor Neighboring gene small nucleolar RNA SNORA43 Neighboring gene ATPase H+ transporting V1 subunit G1 Neighboring gene transmembrane protein 268

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in auditory receptor cell stereocilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in photoreceptor inner segment IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of stereocilia ankle link complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stereocilium tip IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
whirlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    103621005..103712995 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003586440.6 → XP_003586488.1  whirlin isoform X2

    See identical proteins and their annotated locations for XP_003586488.1

    UniProtKB/TrEMBL
    A0A3Q1LPJ0, A0A3Q1MKT8
    Related
    ENSBTAP00000061994.1, ENSBTAT00000086036.2
    Conserved Domains (3) summary
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:36 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:421 → 499
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains

  2. XM_005210575.5 → XP_005210632.1  whirlin isoform X1

    UniProtKB/TrEMBL
    A0A3Q1MKT8, E1B914
    Related
    ENSBTAP00000013333.5, ENSBTAT00000013333.7
    Conserved Domains (3) summary
    cd00992
    Location:138 → 215
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd07356
    Location:36 → 112
    HN_L-whirlin_R1_like; first harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains
    cd07357
    Location:421 → 499
    HN_L-whirlin_R2_like; second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains
Nucleotide Protein
Heading Accession and Version

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