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ATG5 autophagy related 5 [ Bos taurus (cattle) ]

Gene ID: 532686, updated on 6-Jun-2024

Summary

Official Symbol
ATG5provided by VGNC
Official Full Name
autophagy related 5provided by VGNC
Primary source
VGNC:VGNC:56361
See related
BGD:BT28451; Ensembl:ENSBTAG00000005400
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See ATG5 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (43654734..43807560)

Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene reticulon 4 interacting protein 1 Neighboring gene crystallin beta-gamma domain containing 1 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene small ribosomal subunit protein eS1-like Neighboring gene small ribosomal subunit protein eS1-like Neighboring gene PR/SET domain 1 Neighboring gene large ribosomal subunit protein eL6-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC127005

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in C-terminal protein lipidation IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of Atg12-Atg5-Atg16 complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in phagophore assembly site membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
autophagy protein 5
Names
ATG5 autophagy related 5 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034579.2NP_001029751.2  autophagy protein 5

    See identical proteins and their annotated locations for NP_001029751.2

    Status: PROVISIONAL

    Source sequence(s)
    BC102770
    UniProtKB/Swiss-Prot
    Q3MQ24, Q3SZN7
    Related
    ENSBTAP00000007100.5, ENSBTAT00000007100.5
    Conserved Domains (1) summary
    pfam04106
    Location:79270
    APG5; Autophagy protein Apg5

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    43654734..43807560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024996697.2XP_024852465.1  autophagy protein 5 isoform X1

    Conserved Domains (1) summary
    pfam04106
    Location:79225
    APG5; Autophagy protein Apg5
  2. XM_059889749.1XP_059745732.1  autophagy protein 5 isoform X3

    UniProtKB/TrEMBL
    A0AAA9TJZ7
    Related
    ENSBTAP00000097501.1, ENSBTAT00000100112.1
  3. XM_059889750.1XP_059745733.1  autophagy protein 5 isoform X4

  4. XM_024996699.2XP_024852467.1  autophagy protein 5 isoform X2

    UniProtKB/TrEMBL
    A0AAA9S6Y5
    Related
    ENSBTAP00000079673.1, ENSBTAT00000076203.2
    Conserved Domains (1) summary
    pfam04106
    Location:79225
    APG5; Autophagy protein Apg5
  5. XM_024996700.2XP_024852468.1  autophagy protein 5 isoform X5

    UniProtKB/Swiss-Prot
    Q3MQ24, Q3SZN7
    Conserved Domains (1) summary
    pfam04106
    Location:79270
    APG5; Autophagy protein Apg5
  6. XM_024996702.2XP_024852470.1  autophagy protein 5 isoform X7

    UniProtKB/TrEMBL
    A0AAA9TEQ7
    Related
    ENSBTAP00000097083.1, ENSBTAT00000118388.1
    Conserved Domains (1) summary
    pfam04106
    Location:1192
    APG5; Autophagy protein Apg5
  7. XM_024996698.2XP_024852466.1  autophagy protein 5 isoform X1

    Conserved Domains (1) summary
    pfam04106
    Location:79225
    APG5; Autophagy protein Apg5
  8. XM_059889751.1XP_059745734.1  autophagy protein 5 isoform X4

  9. XM_024996701.2XP_024852469.1  autophagy protein 5 isoform X6

    Conserved Domains (1) summary
    pfam04106
    Location:1100
    APG5; Autophagy protein Apg5
  10. XM_059889753.1XP_059745736.1  autophagy protein 5 isoform X6