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SNX13 sorting nexin 13 [ Bos taurus (cattle) ]

Gene ID: 532001, updated on 3-Apr-2024

Summary

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Official Symbol
SNX13provided by VGNC
Official Full Name
sorting nexin 13provided by VGNC
Primary source
VGNC:VGNC:106940
See related
Ensembl:ENSBTAG00000014074
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (26321421..26469306, complement)

Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene phosphoglycerate mutase 1-like Neighboring gene mesoderm-specific transcript homolog protein-like Neighboring gene phosphoribosyl pyrophosphate synthetase 1 like 1 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene histone deacetylase 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC142644

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-13
Names
mesoderm-specific transcript homolog protein pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    26321421..26469306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003585951.6 → XP_003585999.4  sorting nexin-13 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LUS6
    Related
    ENSBTAP00000087592.1, ENSBTAT00000118357.1
    Conserved Domains (4) summary
    cd06873
    Location:557 → 676
    PX_SNX13; The phosphoinositide binding Phox Homology domain of Sorting Nexin 13
    cd08719
    Location:377 → 511
    RGS_SNX13; Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein
    smart00313
    Location:97 → 284
    PXA; Domain associated with PX domains
    pfam08628
    Location:792 → 900
    Nexin_C; Sorting nexin C terminal

  2. XM_059885805.1 → XP_059741788.1  sorting nexin-13 isoform X1

    Related
    ENSBTAP00000061108.2, ENSBTAT00000079788.2

  3. XM_059885807.1 → XP_059741790.1  sorting nexin-13 isoform X4

  4. XM_059885806.1 → XP_059741789.1  sorting nexin-13 isoform X3

  5. XM_059885808.1 → XP_059741791.1  sorting nexin-13 isoform X4

  6. XM_059885809.1 → XP_059741792.1  sorting nexin-13 isoform X5

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001077987.1: Suppressed sequence

    Description
    NM_001077987.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from chicken: SNX13 (GeneID:420598).
Nucleotide Protein Strain
Heading Accession and Version

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