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CASC3 CASC3 exon junction complex subunit [ Bos taurus (domestic cattle) ]

Gene ID: 531673, updated on 18-Aug-2024

Summary

Official Symbol
CASC3provided by VGNC
Official Full Name
CASC3 exon junction complex subunitprovided by VGNC
Primary source
VGNC:VGNC:54702
See related
BGD:BT16037; Ensembl:ENSBTAG00000006250
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
Btz
Orthologs
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Genomic context

Location:
chromosome: 19
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (40433270..40455092)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor alpha Neighboring gene nuclear receptor subfamily 1 group D member 1 Neighboring gene MSL complex subunit 1 Neighboring gene Rap guanine nucleotide exchange factor like 1 Neighboring gene WAS/WASL interacting protein family member 2

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
protein CASC3
Names
MLN 51 homolog
cancer susceptibility 3
cancer susceptibility candidate 3
cancer susceptibility candidate gene 3 protein
metastatic lymph node 51
metastatic lymph node gene 51 protein homolog
protein barentsz

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098069.1NP_001091538.1  protein CASC3

    See identical proteins and their annotated locations for NP_001091538.1

    Status: PROVISIONAL

    Source sequence(s)
    BC140556
    UniProtKB/Swiss-Prot
    A5D7H5
    UniProtKB/TrEMBL
    A0AAF6YPJ0
    Related
    ENSBTAP00000072025.2, ENSBTAT00000079130.2
    Conserved Domains (1) summary
    smart01044
    Location:146248
    Btz; CASC3/Barentsz eIF4AIII binding

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    40433270..40455092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005220733.5XP_005220790.1  protein CASC3 isoform X1

    See identical proteins and their annotated locations for XP_005220790.1

    UniProtKB/Swiss-Prot
    A5D7H5
    UniProtKB/TrEMBL
    A0AAF6YPJ0
    Conserved Domains (1) summary
    smart01044
    Location:146248
    Btz; CASC3/Barentsz eIF4AIII binding
  2. XM_059878109.1XP_059734092.1  protein CASC3 isoform X1

    UniProtKB/Swiss-Prot
    A5D7H5
    UniProtKB/TrEMBL
    A0AAF6YPJ0