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RPAP1 RNA polymerase II associated protein 1 [ Bos taurus (domestic cattle) ]

Gene ID: 531362, updated on 4-Oct-2024

Summary

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Official Symbol
RPAP1provided by VGNC
Official Full Name
RNA polymerase II associated protein 1provided by VGNC
Primary source
VGNC:VGNC:34098
See related
BGD:BT30449; Ensembl:ENSBTAG00000001693
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See RPAP1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (36938820..36955509, complement)

Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene RTF1 homolog, Paf1/RNA polymerase II complex component Neighboring gene inositol-trisphosphate 3-kinase A Neighboring gene TYRO3 protein tyrosine kinase Neighboring gene synaptosomal-associated protein 23-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC139959

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase II-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077984.2 → NP_001071452.1  RNA polymerase II-associated protein 1

    See identical proteins and their annotated locations for NP_001071452.1

    Status: PROVISIONAL

    Source sequence(s)
    BC126520
    UniProtKB/Swiss-Prot
    A0JN53
    UniProtKB/TrEMBL
    A0AAF7AML4
    Related
    ENSBTAP00000071505.2, ENSBTAT00000081849.2
    Conserved Domains (2) summary
    pfam08620
    Location:356 → 421
    RPAP1_C; RPAP1-like, C-terminal
    pfam08621
    Location:225 → 270
    RPAP1_N; RPAP1-like, N-terminal

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    36938820..36955509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005211580.5 → XP_005211637.1  RNA polymerase II-associated protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005211637.1

    UniProtKB/Swiss-Prot
    A0JN53
    UniProtKB/TrEMBL
    A0AAF7AML4
    Conserved Domains (2) summary
    pfam08620
    Location:356 → 421
    RPAP1_C; RPAP1-like, C-terminal
    pfam08621
    Location:225 → 270
    RPAP1_N; RPAP1-like, N-terminal

  2. XM_005211578.5 → XP_005211635.1  RNA polymerase II-associated protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005211635.1

    UniProtKB/Swiss-Prot
    A0JN53
    UniProtKB/TrEMBL
    A0AAF7AML4
    Conserved Domains (2) summary
    pfam08620
    Location:356 → 421
    RPAP1_C; RPAP1-like, C-terminal
    pfam08621
    Location:225 → 270
    RPAP1_N; RPAP1-like, N-terminal

  3. XM_024997609.1 → XP_024853377.1  RNA polymerase II-associated protein 1 isoform X1

    UniProtKB/Swiss-Prot
    A0JN53
    UniProtKB/TrEMBL
    A0AAF7AML4
    Conserved Domains (2) summary
    pfam08620
    Location:356 → 421
    RPAP1_C; RPAP1-like, C-terminal
    pfam08621
    Location:225 → 270
    RPAP1_N; RPAP1-like, N-terminal

  4. XM_024997610.2 → XP_024853378.1  RNA polymerase II-associated protein 1 isoform X1

    UniProtKB/Swiss-Prot
    A0JN53
    UniProtKB/TrEMBL
    A0AAF7AML4
    Conserved Domains (2) summary
    pfam08620
    Location:356 → 421
    RPAP1_C; RPAP1-like, C-terminal
    pfam08621
    Location:225 → 270
    RPAP1_N; RPAP1-like, N-terminal

  5. XM_005211579.4 → XP_005211636.1  RNA polymerase II-associated protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005211636.1

    UniProtKB/Swiss-Prot
    A0JN53
    UniProtKB/TrEMBL
    A0AAF7AML4
    Conserved Domains (2) summary
    pfam08620
    Location:356 → 421
    RPAP1_C; RPAP1-like, C-terminal
    pfam08621
    Location:225 → 270
    RPAP1_N; RPAP1-like, N-terminal
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0JN53.1 GenPept UniProtKB/Swiss-Prot:A0JN53

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