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SDC1 syndecan 1 [ Bos taurus (cattle) ]

Gene ID: 529759, updated on 6-Jun-2024

Summary

Official Symbol
SDC1provided by VGNC
Official Full Name
syndecan 1provided by VGNC
Primary source
VGNC:VGNC:34378
See related
BGD:BT26292; Ensembl:ENSBTAG00000011154
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See SDC1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (78629631..78653584)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene b(0,+)-type amino acid transporter 1-like Neighboring gene pumilio RNA binding family member 2 Neighboring gene lysosomal protein transmembrane 4 alpha Neighboring gene matrilin 3

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

General gene information

Clone Names

  • MGC139976

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001075924.1NP_001069392.1  syndecan-1 precursor

    See identical proteins and their annotated locations for NP_001069392.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123495
    UniProtKB/Swiss-Prot
    Q08DZ5
    Related
    ENSBTAP00000014810.5, ENSBTAT00000014810.6
    Conserved Domains (1) summary
    pfam01034
    Location:246309
    Syndecan; Syndecan domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    78629631..78653584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)