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LTB lymphotoxin beta [ Bos taurus (domestic cattle) ]

Gene ID: 529757, updated on 1-Jan-2025
Official Symbol
LTBprovided by VGNC
Official Full Name
lymphotoxin betaprovided by VGNC
Primary source
VGNC:VGNC:31068
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See LTB in Genome Data Viewer
Location:
chromosome: 23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (27712118..27714147)

Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene proline rich coiled-coil 2A Neighboring gene small nucleolar RNA SNORA38 Neighboring gene natural cytotoxicity triggering receptor 3 Neighboring gene allograft inflammatory factor 1 Neighboring gene leukocyte specific transcript 1 Neighboring gene uncharacterized LOC100847561 Neighboring gene tumor necrosis factor Neighboring gene lymphotoxin alpha

Genomic Sequence:
NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
lymphotoxin-beta
Names
lymphotoxin beta (TNF superfamily, member 3)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    27712118..27714147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002697371.5 → XP_002697417.1  lymphotoxin-beta isoform X1

    See identical proteins and their annotated locations for XP_002697417.1

    Conserved Domains (1) summary
    cd00184
    Location:90 → 243
    TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...

  2. XM_010818382.3 → XP_010816684.1  lymphotoxin-beta isoform X2

    See identical proteins and their annotated locations for XP_010816684.1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials