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H2AC16 H2A clustered histone 16 [ Bos taurus (domestic cattle) ]

Gene ID: 529277, updated on 1-Jan-2025
Official Symbol
H2AC16provided by VGNC
Official Full Name
H2A clustered histone 16provided by VGNC
Primary source
VGNC:VGNC:83590
See related
BGD:BT18268
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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Location:
chromosome: 23
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (30964972..30965527, complement)

Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene histone H3 Neighboring gene H1.5 linker histone, cluster member Neighboring gene H2B clustered histone 16 Neighboring gene H2B clustered histone 15

Genomic Sequence:
NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
histone H2A type 1

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    30964972..30965527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005223728.4 → XP_005223785.1  histone H2A type 1

    See identical proteins and their annotated locations for XP_005223785.1

    UniProtKB/Swiss-Prot
    A5PJH1, P0C0S9
    UniProtKB/TrEMBL
    A0AAA9SR86
    Conserved Domains (1) summary
    PTZ00017
    Location:1 → 130
    PTZ00017; histone H2A; Provisional
Nucleotide Protein Strain
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