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RAI1 retinoic acid induced 1 [ Bos taurus (cattle) ]

Gene ID: 528972, updated on 3-Apr-2024

Summary

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Official Symbol
RAI1provided by VGNC
Official Full Name
retinoic acid induced 1provided by VGNC
Primary source
VGNC:VGNC:33695
See related
BGD:BT24859; Ensembl:ENSBTAG00000004768
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See RAI1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (34649676..34753214, complement)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene target of myb1 like 2 membrane trafficking protein Neighboring gene sterol regulatory element binding transcription factor 1 Neighboring gene microRNA mir-33b Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene uncharacterized LOC132342977 Neighboring gene uncharacterized LOC112442642 Neighboring gene phosphatidylethanolamine N-methyltransferase Neighboring gene ras related dexamethasone induced 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid-induced protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    34649676..34753214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059878340.1 → XP_059734323.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    E1B9X1
    Related
    ENSBTAP00000006264.5, ENSBTAT00000006264.7

  2. XM_024980811.2 → XP_024836579.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    A0A3Q1LSI3, E1B9X1
    Conserved Domains (2) summary
    cl22851
    Location:1659 → 1880
    PHD_SF; PHD finger superfamily
    cl26464
    Location:939 → 1154
    Atrophin-1; Atrophin-1 family

  3. XM_024980812.2 → XP_024836580.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    A0A3Q1LSI3, E1B9X1
    Conserved Domains (2) summary
    cl22851
    Location:1659 → 1880
    PHD_SF; PHD finger superfamily
    cl26464
    Location:939 → 1154
    Atrophin-1; Atrophin-1 family

  4. XM_059878337.1 → XP_059734320.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    E1B9X1

  5. XM_059878336.1 → XP_059734319.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    E1B9X1

  6. XM_059878335.1 → XP_059734318.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    E1B9X1

  7. XM_059878334.1 → XP_059734317.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    E1B9X1

  8. XM_059878332.1 → XP_059734315.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    E1B9X1

  9. XM_059878333.1 → XP_059734316.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    E1B9X1

  10. XM_059878338.1 → XP_059734321.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    E1B9X1

  11. XM_059878339.1 → XP_059734322.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    E1B9X1

  12. XM_024980815.2 → XP_024836583.1  retinoic acid-induced protein 1

    UniProtKB/TrEMBL
    A0A3Q1LSI3, E1B9X1
    Conserved Domains (2) summary
    cl22851
    Location:1659 → 1880
    PHD_SF; PHD finger superfamily
    cl26464
    Location:939 → 1154
    Atrophin-1; Atrophin-1 family
Nucleotide Protein Strain
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