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ACKR1 atypical chemokine receptor 1 [ Bos taurus (domestic cattle) ]

Gene ID: 528076, updated on 27-Dec-2024
Official Symbol
ACKR1provided by VGNC
Official Full Name
atypical chemokine receptor 1provided by VGNC
Primary source
VGNC:VGNC:58436
See related
BGD:BT20633
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
DARC
Orthologs
human mouse all
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See ACKR1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (10526181..10527620, complement)

Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene GTP-binding nuclear protein Ran-like Neighboring gene mucosal pentraxin 1 Neighboring gene uncharacterized LOC101903951 Neighboring gene cell adhesion molecule 3 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene interferon gamma inducible protein 16

Genomic Sequence:
NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. Characterization and transcriptional analysis of the promoter region of the Duffy blood group, chemokine receptor (DARC) gene in cattle. Carvalho TL, et al. Vet Immunol Immunopathol, 2009 Dec 15. PMID 19559488
  2. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
  3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the 5' flanking region of the DARC gene was isolated and characterized
    Title: Characterization and transcriptional analysis of the promoter region of the Duffy blood group, chemokine receptor (DARC) gene in cattle.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-C chemokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of chemokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
atypical chemokine receptor 1
Names
Duffy blood group, chemokine receptor
atypical chemokine receptor 1 (Duffy blood group)
blood group antigen
duffy antigen/chemokine receptor
duffy antigen/receptor for chemokine glycoprotein

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015634.1 → NP_001015634.1  atypical chemokine receptor 1

    See identical proteins and their annotated locations for NP_001015634.1

    Status: PROVISIONAL

    Source sequence(s)
    AF109158
    UniProtKB/Swiss-Prot
    A5PKF0, Q5E941, Q9GLX0
    Conserved Domains (1) summary
    cd15010
    Location:54 → 310
    7tmA_ACKR1_DARC; Duffy antigen receptor for chemokines, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    10526181..10527620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9GLX0.2 GenPept UniProtKB/Swiss-Prot:Q9GLX0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials