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SEMA6B semaphorin 6B [ Bos taurus (cattle) ]

Gene ID: 527573, updated on 6-Jun-2024

Summary

Official Symbol
SEMA6Bprovided by VGNC
Official Full Name
semaphorin 6Bprovided by VGNC
Primary source
VGNC:VGNC:34442
See related
BGD:BT23081; Ensembl:ENSBTAG00000031658
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See SEMA6B in Genome Data Viewer
Location:
chromosome: 7
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (19554889..19585511)

Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-2285by Neighboring gene uncharacterized LOC104969103 Neighboring gene leucine rich alpha-2-glycoprotein 1 Neighboring gene perilipin 5

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    19554889..19585511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024995002.2XP_024850770.1  semaphorin-6B isoform X1

    UniProtKB/TrEMBL
    E1BIT8
    Conserved Domains (2) summary
    cd11267
    Location:57524
    Sema_6B; The Sema domain, a protein interacting module, of semaphorin 6B (Sema6B)
    pfam01437
    Location:525565
    PSI; Plexin repeat
  2. XM_024995000.2XP_024850768.2  semaphorin-6B isoform X2

    UniProtKB/TrEMBL
    A0AAA9SQB4, E1BIT8
    Related
    ENSBTAP00000085126.1, ENSBTAT00000086140.2
  3. XM_024995001.2XP_024850769.1  semaphorin-6B isoform X1

    UniProtKB/TrEMBL
    E1BIT8
    Conserved Domains (2) summary
    cd11267
    Location:57524
    Sema_6B; The Sema domain, a protein interacting module, of semaphorin 6B (Sema6B)
    pfam01437
    Location:525565
    PSI; Plexin repeat
  4. XM_024995003.2XP_024850771.1  semaphorin-6B isoform X3

    UniProtKB/TrEMBL
    E1BIT8
    Related
    ENSBTAP00000003619.7, ENSBTAT00000003619.7
    Conserved Domains (2) summary
    pfam01437
    Location:428468
    PSI; Plexin repeat
    cl15693
    Location:1427
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins