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Ccdc59 coiled-coil domain containing 59 [ Mus musculus (house mouse) ]

Gene ID: 52713, updated on 30-Apr-2024

Summary

Official Symbol
Ccdc59provided by MGI
Official Full Name
coiled-coil domain containing 59provided by MGI
Primary source
MGI:MGI:1289302
See related
Ensembl:ENSMUSG00000019897 AllianceGenome:MGI:1289302
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D10Ertd718e; 2300004H16Rik
Summary
Predicted to be located in nucleus. Is expressed in early conceptus; embryo; extraembryonic component; oocyte; and primitive endoderm. Orthologous to human CCDC59 (coiled-coil domain containing 59). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 15.4), placenta adult (RPKM 12.8) and 23 other tissues See more
Orthologs
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Genomic context

See Ccdc59 in Genome Data Viewer
Location:
10 D1; 10 55.12 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (105677340..105683371)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (105841479..105847510)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr10:105012433-105012734 Neighboring gene predicted gene 15663 Neighboring gene STARR-seq mESC enhancer starr_27763 Neighboring gene STARR-seq mESC enhancer starr_27765 Neighboring gene methyltransferase like 25 Neighboring gene STARR-positive B cell enhancer ABC_E9803 Neighboring gene STARR-positive B cell enhancer ABC_E6919 Neighboring gene STARR-seq mESC enhancer starr_27766 Neighboring gene STARR-seq mESC enhancer starr_27767 Neighboring gene predicted gene, 25342 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
thyroid transcription factor 1-associated protein 26
Names
TTF-1-associated protein 26
coiled-coil domain-containing protein 59

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025602.3NP_079878.1  thyroid transcription factor 1-associated protein 26

    See identical proteins and their annotated locations for NP_079878.1

    Status: PROVISIONAL

    Source sequence(s)
    AC132471
    Consensus CDS
    CCDS24158.1
    UniProtKB/Swiss-Prot
    Q8BZ86, Q8R2N0, Q9CR69, Q9CV91
    Related
    ENSMUSP00000020049.9, ENSMUST00000020049.9
    Conserved Domains (2) summary
    pfam08524
    Location:138239
    rRNA_processing; rRNA processing
    cl00489
    Location:164211
    60KD_IMP; 60Kd inner membrane protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    105677340..105683371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)