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Cd300lg CD300 molecule like family member G [ Mus musculus (house mouse) ]

Gene ID: 52685, updated on 23-Jun-2021

Summary

Official Symbol
Cd300lgprovided by MGI
Official Full Name
CD300 molecule like family member Gprovided by MGI
Primary source
MGI:MGI:1289168
See related
Ensembl:ENSMUSG00000017309
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Clm; Clm9; nepm; D11Ertd736; D11Ertd736e; 2310016B05Rik
Expression
Biased expression in subcutaneous fat pad adult (RPKM 49.1), mammary gland adult (RPKM 34.6) and 12 other tissues See more
Orthologs
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Genomic context

See Cd300lg in Genome Data Viewer
Location:
11 D; 11 65.48 cM
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (101932337..101946443)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (102041511..102055617)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (101902825..101916931)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene CFAP97 domain containing 1 Neighboring gene membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) Neighboring gene predicted gene, 39393 Neighboring gene membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) Neighboring gene pancreatic polypeptide

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables IgM binding IDA
Inferred from Direct Assay
more info
PubMed 
enables transmembrane signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in basolateral plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
CMRF35-like molecule 9
Names
CD300 antigen like family member G
CLM-9
CMRF-35-like molecule-9
nepmucin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160711.1NP_001154183.1  CMRF35-like molecule 9 isoform 1 precursor

    See identical proteins and their annotated locations for NP_001154183.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AB243063, BB630327, BB739951
    Consensus CDS
    CCDS48939.1
    UniProtKB/Swiss-Prot
    Q1ERP8
    Related
    ENSMUSP00000102782.3, ENSMUST00000107164.3
    Conserved Domains (2) summary
    cd05716
    Location:24121
    Ig_pIgR; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)
    smart00410
    Location:22123
    IG_like; Immunoglobulin like
  2. NM_001160712.1NP_001154184.1  CMRF35-like molecule 9 isoform 3 precursor

    See identical proteins and their annotated locations for NP_001154184.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an in-frame segment, as compared to variant 1. The resulting isoform (3) lacks an internal segment, as compared to isoform 1.
    Source sequence(s)
    AB243065, BB630327, BB739951
    UniProtKB/Swiss-Prot
    Q1ERP8
    Conserved Domains (2) summary
    cd05716
    Location:24121
    Ig_pIgR; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)
    smart00410
    Location:22123
    IG_like; Immunoglobulin like
  3. NM_001160713.1NP_001154185.1  CMRF35-like molecule 9 isoform 2 precursor

    See identical proteins and their annotated locations for NP_001154185.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame coding exon, as compared to variant 1. The resulting isoform (2) lacks an internal segment, as compared to isoform 1.
    Source sequence(s)
    AB243064, BB630327, BB739951
    Consensus CDS
    CCDS48940.1
    UniProtKB/Swiss-Prot
    Q1ERP8
    Related
    ENSMUSP00000102781.3, ENSMUST00000107163.9
    Conserved Domains (2) summary
    cd05716
    Location:24121
    Ig_pIgR; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)
    smart00410
    Location:22123
    IG_like; Immunoglobulin like
  4. NM_027987.3NP_082263.2  CMRF35-like molecule 9 isoform 4 precursor

    See identical proteins and their annotated locations for NP_082263.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an exon and a segment in the CDS, as compared to variant 1. The reading frame is not affected and the resulting isoform (4) lacks an internal segment, as compared to isoform 1.
    Source sequence(s)
    AK009375, BB150844, BB630327, BC116906
    Consensus CDS
    CCDS25484.1
    UniProtKB/Swiss-Prot
    Q1ERP8
    Related
    ENSMUSP00000017453.6, ENSMUST00000017453.12
    Conserved Domains (2) summary
    cd05716
    Location:24121
    Ig_pIgR; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)
    smart00410
    Location:22123
    IG_like; Immunoglobulin like

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    101932337..101946443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006533713.1XP_006533776.1  CMRF35-like molecule 9 isoform X1

    Conserved Domains (2) summary
    cd05716
    Location:24121
    Ig_pIgR_like; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) and similar domains
    PHA03247
    Location:131285
    PHA03247; large tegument protein UL36; Provisional
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