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Cisd1 CDGSH iron sulfur domain 1 [ Mus musculus (house mouse) ]

Gene ID: 52637, updated on 19-Feb-2019

Summary

Official Symbol
Cisd1provided by MGI
Official Full Name
CDGSH iron sulfur domain 1provided by MGI
Primary source
MGI:MGI:1261855
See related
Ensembl:ENSMUSG00000037710
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Zcd1; AU043990; AW743335; mitoNEET; D10Ertd214e
Expression
Ubiquitous expression in kidney adult (RPKM 115.7), liver adult (RPKM 78.6) and 27 other tissues See more
Orthologs

Genomic context

See Cisd1 in Genome Data Viewer
Location:
10 B5.3; 10 36.88 cM
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (71330494..71344849, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (70793242..70807597, complement)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene 20609 Neighboring gene ribosomal protein L19, pseudogene 2 Neighboring gene inositol polyphosphate multikinase Neighboring gene proteolipid protein 2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1)  1 citation
  • Endonuclease-mediated (1) 

Pathways from BioSystems

  • Adipogenesis genes, organism-specific biosystem (from WikiPathways)
    Adipogenesis genes, organism-specific biosystemThe different classes of factors involved in adipogenesis are shown. Adipogenesis is the process by which fat cells differentiate from predadipocytes to adipocytes (fat cells). Adipose tissue, compos...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
2 iron, 2 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
identical protein binding ISO
Inferred from Sequence Orthology
more info
 
iron ion binding ISO
Inferred from Sequence Orthology
more info
PubMed 
iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of cellular respiration IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasmic side of mitochondrial outer membrane ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial outer membrane IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion HDA PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
CDGSH iron-sulfur domain-containing protein 1
Names
zinc finger, CDGSH-type domain 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134007.4NP_598768.1  CDGSH iron-sulfur domain-containing protein 1

    See identical proteins and their annotated locations for NP_598768.1

    Status: PROVISIONAL

    Source sequence(s)
    AC153509, AC156270
    Consensus CDS
    CCDS23917.1
    UniProtKB/Swiss-Prot
    Q91WS0
    Related
    ENSMUSP00000043559.8, ENSMUST00000045887.8
    Conserved Domains (2) summary
    smart00704
    Location:5593
    ZnF_CDGSH; CDGSH-type zinc finger. Function unknown
    pfam10660
    Location:1241
    MitoNEET_N; Iron-containing outer mitochondrial membrane protein N-terminus

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

    Range
    71330494..71344849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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