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Cdkn2aipnl CDKN2A interacting protein N-terminal like [ Mus musculus (house mouse) ]

Gene ID: 52626, updated on 21-Apr-2024

Summary

Official Symbol
Cdkn2aipnlprovided by MGI
Official Full Name
CDKN2A interacting protein N-terminal likeprovided by MGI
Primary source
MGI:MGI:1261797
See related
Ensembl:ENSMUSG00000020392 AllianceGenome:MGI:1261797
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MNCb-1520; D11Ertd497e; A430101B06Rik
Summary
Predicted to be active in nucleolus and nucleoplasm. Orthologous to human CDKN2AIPNL (CDKN2A interacting protein N-terminal like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 29.4), CNS E11.5 (RPKM 18.2) and 28 other tissues See more
Orthologs
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Genomic context

Location:
11 B1.3; 11 31.78 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (51858458..51868163)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (51967631..51977336)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39822 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51749624-51749825 Neighboring gene STARR-positive B cell enhancer ABC_E5224 Neighboring gene STARR-positive B cell enhancer ABC_E11478 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51762773-51762956 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51763076-51763185 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51763442-51763752 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51775297-51775573 Neighboring gene predicted gene, 26061 Neighboring gene STARR-seq mESC enhancer starr_29438 Neighboring gene ubiquitin-conjugating enzyme E2B Neighboring gene cyclin dependent kinase like 3 Neighboring gene STARR-seq mESC enhancer starr_29439 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:51879429-51879612 Neighboring gene STARR-positive B cell enhancer ABC_E8875 Neighboring gene STARR-positive B cell enhancer ABC_E10674 Neighboring gene protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform Neighboring gene predicted gene, 30631

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
CDKN2AIP N-terminal-like protein
Names
CDKN2A-interacting protein N-terminal-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029976.3NP_084252.1  CDKN2AIP N-terminal-like protein

    See identical proteins and their annotated locations for NP_084252.1

    Status: VALIDATED

    Source sequence(s)
    AK150573, BQ032176, BY088687
    Consensus CDS
    CCDS24663.1
    UniProtKB/Swiss-Prot
    B1AU49, Q9D211
    Related
    ENSMUSP00000099824.5, ENSMUST00000102763.5
    Conserved Domains (1) summary
    pfam11952
    Location:25113
    XTBD; XRN-Two Binding Domain, XTBD

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    51858458..51868163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)