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SDR16C6 short chain dehydrogenase/reductase family 16C, member 6 [ Bos taurus (cattle) ]

Gene ID: 525500, updated on 13-Apr-2024

Summary

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Gene symbol
SDR16C6
Gene description
short chain dehydrogenase/reductase family 16C, member 6
See related
BGD:BT13183; Ensembl:ENSBTAG00000040321
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
RDHE2
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Genomic context

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Location:
chromosome: 14
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 14 NC_037341.1 (23475940..23502005, complement)

Chromosome 14 - NC_037341.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132342194 Neighboring gene short chain dehydrogenase/reductase family 16C member 5 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene proenkephalin Neighboring gene uncharacterized LOC132342195

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037341.1 Chromosome 14 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major effect of retinal short-chain dehydrogenase reductase (RDHE2) on bovine fat colour. Tian R, et al. Mamm Genome, 2012 Jun. PMID 22451137
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The RDHE2 V6A genotype affected several fat colour traits.
    Title: Major effect of retinal short-chain dehydrogenase reductase (RDHE2) on bovine fat colour.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short-chain dehydrogenase/reductase family 16C member 6
Names
epidermal retinal dehydrogenase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099707.1 → NP_001093177.1  short-chain dehydrogenase/reductase family 16C member 6

    See identical proteins and their annotated locations for NP_001093177.1

    Status: PROVISIONAL

    Source sequence(s)
    BC142138
    UniProtKB/Swiss-Prot
    A5PJJ7
    UniProtKB/TrEMBL
    A0A452DKG3
    Related
    ENSBTAP00000048107.3, ENSBTAT00000052250.3
    Conserved Domains (2) summary
    cd05339
    Location:38 → 281
    17beta-HSDXI-like_SDR_c; human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs
    pfam00106
    Location:37 → 227
    adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037341.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    23475940..23502005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A5PJJ7.1 GenPept UniProtKB/Swiss-Prot:A5PJJ7

Gene LinkOut

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