U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Stbd1 starch binding domain 1 [ Mus musculus (house mouse) ]

Gene ID: 52331, updated on 8-May-2024

Summary

Official Symbol
Stbd1provided by MGI
Official Full Name
starch binding domain 1provided by MGI
Primary source
MGI:MGI:1261768
See related
Ensembl:ENSMUSG00000047963 AllianceGenome:MGI:1261768
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D5Ertd593e; D530019K15Rik
Summary
Predicted to enable enzyme binding activity and glycogen binding activity. Involved in intracellular transport. Predicted to be located in T-tubule; endoplasmic reticulum; and perinuclear region of cytoplasm. Predicted to be integral component of plasma membrane. Predicted to be active in membrane. Is expressed in several structures, including diaphragm; genitourinary system; jaw; nasal capsule; and ventral grey horn. Orthologous to human STBD1 (starch binding domain 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver E18 (RPKM 28.8), bladder adult (RPKM 10.3) and 15 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Stbd1 in Genome Data Viewer
Location:
5 E2; 5 47.21 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (92750910..92754438)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (92603051..92606579)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene scavenger receptor class B, member 2 Neighboring gene STARR-seq mESC enhancer starr_13641 Neighboring gene microRNA 6415 Neighboring gene STARR-seq mESC enhancer starr_13643 Neighboring gene STARR-positive B cell enhancer ABC_E10330 Neighboring gene STARR-seq mESC enhancer starr_13648 Neighboring gene family with sequence similarity 47, member E Neighboring gene VISTA enhancer mm187 Neighboring gene coiled-coil domain containing 158 Neighboring gene STARR-seq mESC enhancer starr_13649 Neighboring gene shroom family member 3 Neighboring gene STARR-seq mESC enhancer starr_13650 Neighboring gene STARR-seq mESC enhancer starr_13651 Neighboring gene microRNA 1961

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (3)  1 citation

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC148231, MGC148232

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables cargo receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables cargo receptor activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables enzyme binding ISO
Inferred from Sequence Orthology
more info
 
enables glycogen binding ISO
Inferred from Sequence Orthology
more info
 
enables polysaccharide binding ISO
Inferred from Sequence Orthology
more info
 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in T-tubule ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
starch-binding domain-containing protein 1
Names
genethonin 1
glycophagy cargo receptor stbd1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175096.3NP_780305.1  starch-binding domain-containing protein 1

    See identical proteins and their annotated locations for NP_780305.1

    Status: PROVISIONAL

    Source sequence(s)
    AK050416
    Consensus CDS
    CCDS19433.1
    UniProtKB/Swiss-Prot
    Q147T8, Q8C7E7
    Related
    ENSMUSP00000054322.4, ENSMUST00000050952.4
    Conserved Domains (1) summary
    cd05813
    Location:244338
    CBM20_genethonin_1; Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    92750910..92754438
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)