U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Rbm34 RNA binding motif protein 34 [ Mus musculus (house mouse) ]

Gene ID: 52202, updated on 28-Oct-2024

Summary

Official Symbol
Rbm34provided by MGI
Official Full Name
RNA binding motif protein 34provided by MGI
Primary source
MGI:MGI:1098653
See related
Ensembl:ENSMUSG00000033931 AllianceGenome:MGI:1098653
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6330444B11; D8Ertd233e; 4930547K05Rik
Summary
Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in chromosome and nucleoplasm. Predicted to be active in nucleolus. Is expressed in several structures, including cardiovascular system; genitourinary system; gut; integumental system; and nervous system. Orthologous to human RBM34 (RNA binding motif protein 34). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Ubiquitous expression in placenta adult (RPKM 5.7), CNS E11.5 (RPKM 3.7) and 26 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Rbm34 in Genome Data Viewer
Location:
8 E2; 8 74.64 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (127673922..127697799, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (126947172..126971127, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene translocase of outer mitochondrial membrane 20 Neighboring gene predicted gene, 53208 Neighboring gene STARR-positive B cell enhancer ABC_E6707 Neighboring gene predicted gene, 26397 Neighboring gene STARR-seq mESC enhancer starr_23083 Neighboring gene STARR-positive B cell enhancer ABC_E6708 Neighboring gene predicted gene, 29688 Neighboring gene predicted gene, 38574

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 
located_in chromosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374800.1NP_001361729.1  RNA-binding protein 34 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC115706, AC119874
    Consensus CDS
    CCDS90487.1
    UniProtKB/TrEMBL
    A0A1D5RLR3
    Related
    ENSMUSP00000148473.2, ENSMUST00000212618.2
    Conserved Domains (2) summary
    cd12395
    Location:272344
    RRM2_RBM34; RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins
    cl17169
    Location:189260
    RRM_SF; RNA recognition motif (RRM) superfamily
  2. NM_172762.3NP_766350.2  RNA-binding protein 34 isoform 1

    See identical proteins and their annotated locations for NP_766350.2

    Status: VALIDATED

    Source sequence(s)
    AC119874, BC141278
    Consensus CDS
    CCDS22787.1
    UniProtKB/Swiss-Prot
    B2RUP0, Q8C5L7
    Related
    ENSMUSP00000048450.7, ENSMUST00000045994.8
    Conserved Domains (2) summary
    cd12394
    Location:189280
    RRM1_RBM34; RNA recognition motif 1 in RNA-binding protein 34 (RBM34) and similar proteins
    cd12395
    Location:292364
    RRM2_RBM34; RNA recognition motif 2 in RNA-binding protein 34 (RBM34) and similar proteins

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    127673922..127697799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)