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CCR6 C-C motif chemokine receptor 6 [ Bos taurus (domestic cattle) ]

Gene ID: 519716, updated on 30-Jan-2025
Official Symbol
CCR6provided by VGNC
Official Full Name
C-C motif chemokine receptor 6provided by VGNC
Primary source
VGNC:VGNC:26986
See related
BGD:BT10551; EnsemblRapid:ENSBTAG00070016246
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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See CCR6 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (101895500..101927725)

Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 43 Neighboring gene uncharacterized LOC112448093 Neighboring gene T-complex protein 10A homolog 2 Neighboring gene G protein-coupled receptor 31 Neighboring gene uncharacterized LOC112448176

Genomic Sequence:
NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. The bovine chemokine receptors and their mRNA abundance in mononuclear phagocytes. Widdison S, et al. BMC Genomics, 2010 Jul 19. PMID 20642824, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-C chemokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables C-C chemokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of dendritic cell chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in thymocyte migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
C-C chemokine receptor type 6

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001194961.1 → NP_001181890.1  C-C chemokine receptor type 6

    See identical proteins and their annotated locations for NP_001181890.1

    Status: PROVISIONAL

    Source sequence(s)
    GU936962
    UniProtKB/TrEMBL
    A0AAA9TAU3, D9ZDE1
    Conserved Domains (2) summary
    pfam00001
    Location:58 → 311
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:50 → 182
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    101895500..101927725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005211126.5 → XP_005211183.1  C-C chemokine receptor type 6 isoform X1

    See identical proteins and their annotated locations for XP_005211183.1

    UniProtKB/TrEMBL
    A0AAA9TAU3, F1MT56
    Conserved Domains (1) summary
    cd15172
    Location:47 → 327
    7tmA_CCR6; CC chemokine receptor type 6, member of the class A family of seven-transmembrane G protein-coupled receptors

  2. XM_059889695.1 → XP_059745678.1  C-C chemokine receptor type 6 isoform X1

    UniProtKB/TrEMBL
    A0AAA9TAU3, F1MT56

  3. XM_005211124.5 → XP_005211181.1  C-C chemokine receptor type 6 isoform X1

    See identical proteins and their annotated locations for XP_005211181.1

    UniProtKB/TrEMBL
    A0AAA9TAU3, F1MT56
    Related
    ENSBTAP00070021438.1, ENSBTAT00070036463.1
    Conserved Domains (1) summary
    cd15172
    Location:47 → 327
    7tmA_CCR6; CC chemokine receptor type 6, member of the class A family of seven-transmembrane G protein-coupled receptors
Nucleotide Protein Strain
Heading Accession and Version

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