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C9orf78 chromosome 9 open reading frame 78 [ Homo sapiens (human) ]

Gene ID: 51759, updated on 5-Nov-2017
Official Symbol
C9orf78provided by HGNC
Official Full Name
chromosome 9 open reading frame 78provided by HGNC
Primary source
HGNC:HGNC:24932
See related
Ensembl:ENSG00000136819 Vega:OTTHUMG00000020796
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HCA59; HSPC220; bA409K20.3
Expression
Ubiquitous expression in bone marrow (RPKM 42.7), kidney (RPKM 29.7) and 25 other tissues See more
Orthologs
Location:
9q34.11
Exon count:
9
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) 9 NC_000009.12 (129827285..129835293, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (132589564..132597572, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene torsin family 1 member B Neighboring gene torsin family 1 member A Neighboring gene ubiquitin specific peptidase 20 Neighboring gene microRNA 6855 Neighboring gene formin binding protein 1 Neighboring gene G protein-coupled receptor 107

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
Preferred Names
telomere length and silencing protein 1 homolog; uncharacterized protein C9orf78
Names
hepatocellular carcinoma-associated antigen 59

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016520.2NP_057604.1  telomere length and silencing protein 1 homolog

    See identical proteins and their annotated locations for NP_057604.1

    Status: VALIDATED

    Source sequence(s)
    AL158207, BC007664, BU674575, CB128496
    Consensus CDS
    CCDS6931.1
    UniProtKB/Swiss-Prot
    Q9NZ63
    Related
    ENSP00000361524.3, OTTHUMP00000022352, ENST00000372447.7, OTTHUMT00000054625
    Conserved Domains (1) summary
    pfam07052
    Location:101196
    Hep_59; Hepatocellular carcinoma-associated antigen 59

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p7 Primary Assembly

    Range
    129827285..129835293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011518780.2XP_011517082.1  uncharacterized protein C9orf78 isoform X1

    Conserved Domains (1) summary
    pfam07052
    Location:81176
    Hep_59; Hepatocellular carcinoma-associated antigen 59

Alternate CHM1_1.1

Genomic

  1. NC_018920.2 Alternate CHM1_1.1

    Range
    132738592..132746596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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