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SATB1 SATB homeobox 1 [ Bos taurus (domestic cattle) ]

Gene ID: 516952, updated on 5-Sep-2025
Official Symbol
SATB1provided by VGNC
Official Full Name
SATB homeobox 1provided by VGNC
Primary source
VGNC:VGNC:34298
See related
BGD:BT10699; EnsemblRapid:ENSBTAG00070000139
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
all
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Try the new Transcripts and proteins table
See SATB1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (155431054..155531184, complement)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132346087 Neighboring gene uncharacterized LOC132346088 Neighboring gene uncharacterized LOC132346089 Neighboring gene collagen alpha-1(I) chain Neighboring gene uncharacterized LOC101908237 Neighboring gene microRNA mir-2285e-1 Neighboring gene potassium voltage-gated channel subfamily H member 8

Genomic Sequence:
NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Clone Names

  • MGC165895

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
DNA-binding protein SATB1
Names
special AT-rich sequence binding protein 1

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102040.2 → NP_001095510.1  DNA-binding protein SATB1

    See identical proteins and their annotated locations for NP_001095510.1

    Status: PROVISIONAL

    Source sequence(s)
    BC151323
    UniProtKB/TrEMBL
    A7MB41
    Related
    ENSBTAP00070000151.1, ENSBTAT00070000254.1
    Conserved Domains (4) summary
    smart00389
    Location:641 → 698
    HOX; Homeodomain
    cd11585
    Location:74 → 169
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:366 → 443
    CUT; CUT domain
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    155431054..155531184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024988567.2 → XP_024844335.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A7MB41
    Conserved Domains (4) summary
    smart00389
    Location:641 → 698
    HOX; Homeodomain
    cd11585
    Location:74 → 169
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:366 → 443
    CUT; CUT domain
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  2. XM_024988547.2 → XP_024844315.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A7MB41
    Conserved Domains (4) summary
    smart00389
    Location:641 → 698
    HOX; Homeodomain
    cd11585
    Location:74 → 169
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:366 → 443
    CUT; CUT domain
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  3. XM_024988520.2 → XP_024844288.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A7MB41
    Conserved Domains (4) summary
    smart00389
    Location:641 → 698
    HOX; Homeodomain
    cd11585
    Location:74 → 169
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:366 → 443
    CUT; CUT domain
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  4. XM_005202140.5 → XP_005202197.1  DNA-binding protein SATB1 isoform X1

    See identical proteins and their annotated locations for XP_005202197.1

    UniProtKB/TrEMBL
    A7MB41
    Conserved Domains (4) summary
    smart00389
    Location:641 → 698
    HOX; Homeodomain
    cd11585
    Location:74 → 169
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:366 → 443
    CUT; CUT domain
    pfam16557
    Location:176 → 246
    CUTL; CUT1-like DNA-binding domain of SATB

  5. XM_059883800.1 → XP_059739783.1  DNA-binding protein SATB1 isoform X1

    UniProtKB/TrEMBL
    A7MB41
Nucleotide Protein Strain
Heading Accession and Version

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