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RMND5B required for meiotic nuclear division 5 homolog B [ Bos taurus (cattle) ]

Gene ID: 515291, updated on 3-Apr-2024

Summary

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Official Symbol
RMND5Bprovided by VGNC
Official Full Name
required for meiotic nuclear division 5 homolog Bprovided by VGNC
Primary source
VGNC:VGNC:33997
See related
BGD:BT25704; Ensembl:ENSBTAG00000006371
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (39225963..39243187)

Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107132625 Neighboring gene NEDD4 binding protein 3 Neighboring gene nuclear nucleic acid-binding protein C1D-like Neighboring gene NHP2 ribonucleoprotein Neighboring gene heterogeneous nuclear ribonucleoprotein A/B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC142716

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein transferase RMND5B
NP_001069174.1
XP_010805453.1
XP_059744132.1
XP_059744133.1
XP_059744134.1
XP_059744135.1
XP_059744136.1
XP_059744137.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001075706.1 → NP_001069174.1  E3 ubiquitin-protein transferase RMND5B

    See identical proteins and their annotated locations for NP_001069174.1

    Status: PROVISIONAL

    Source sequence(s)
    BC120327
    UniProtKB/TrEMBL
    A0A3Q1M067, Q0VC67
    Related
    ENSBTAP00000008362.3, ENSBTAT00000008362.5
    Conserved Domains (3) summary
    smart00667
    Location:116 → 148
    LisH; Lissencephaly type-1-like homology motif
    pfam10607
    Location:155 → 299
    CLTH; CTLH/CRA C-terminal to LisH motif domain
    cd16795
    Location:336 → 382
    dRING_RMD5B; Degenerated RING finger found in protein RMD5 homolog B (RMD5B)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    39225963..39243187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059888154.1 → XP_059744137.1  E3 ubiquitin-protein transferase RMND5B isoform X6

  2. XM_059888150.1 → XP_059744133.1  E3 ubiquitin-protein transferase RMND5B isoform X2

    Related
    ENSBTAP00000077654.1, ENSBTAT00000090241.1

  3. XM_059888153.1 → XP_059744136.1  E3 ubiquitin-protein transferase RMND5B isoform X5

  4. XM_010807151.4 → XP_010805453.1  E3 ubiquitin-protein transferase RMND5B isoform X6

    See identical proteins and their annotated locations for XP_010805453.1

    UniProtKB/TrEMBL
    A0A3Q1M067
    Conserved Domains (2) summary
    COG5109
    Location:2 → 333
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:95 → 239
    CLTH; CTLH/CRA C-terminal to LisH motif domain

  5. XM_059888152.1 → XP_059744135.1  E3 ubiquitin-protein transferase RMND5B isoform X4

  6. XM_059888149.1 → XP_059744132.1  E3 ubiquitin-protein transferase RMND5B isoform X1

    Related
    ENSBTAP00000078397.1, ENSBTAT00000112013.1

  7. XM_059888151.1 → XP_059744134.1  E3 ubiquitin-protein transferase RMND5B isoform X3

    Related
    ENSBTAP00000063336.2, ENSBTAT00000084614.2
Nucleotide Protein Strain
Heading Accession and Version

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