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STN1 STN1 subunit of CST complex [ Bos taurus (cattle) ]

Gene ID: 514213, updated on 6-Jun-2024

Summary

Official Symbol
STN1provided by VGNC
Official Full Name
STN1 subunit of CST complexprovided by VGNC
Primary source
VGNC:VGNC:35408
See related
BGD:BT14486; Ensembl:ENSBTAG00000015019
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
OBFC1
Orthologs
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Genomic context

See STN1 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 26 NC_037353.1 (24413860..24480023, complement)

Chromosome 26 - NC_037353.1Genomic Context describing neighboring genes Neighboring gene neuralized E3 ubiquitin protein ligase 1 Neighboring gene SH3 and PX domains 2A Neighboring gene STE20 like kinase Neighboring gene collagen type XVII alpha 1 chain

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037353.1 Chromosome 26 Reference ARS-UCD2.0 Primary Assembly

Pathways from PubChem

General gene information

Clone Names

  • MGC143179

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in telomere capping IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of CST complex IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of DNA replication factor A complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in chromosome, telomeric region IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
CST complex subunit STN1
Names
STN1, CST complex subunit
oligonucleotide/oligosaccharide binding fold containing 1
oligonucleotide/oligosaccharide-binding fold-containing protein 1
suppressor of cdc thirteen homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076849.1NP_001070317.1  CST complex subunit STN1

    See identical proteins and their annotated locations for NP_001070317.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123847
    UniProtKB/Swiss-Prot
    Q08DB2
    UniProtKB/TrEMBL
    A0AAA9SSD8
    Related
    ENSBTAP00000098937.1, ENSBTAT00000102623.1
    Conserved Domains (2) summary
    cd04483
    Location:58157
    hOBFC1_like; hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which ...
    pfam09170
    Location:159336
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037353.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    24413860..24480023 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059881843.1XP_059737826.1  CST complex subunit STN1 isoform X4

    UniProtKB/TrEMBL
    A0AAA9RSC3
  2. XM_024985601.2XP_024841369.2  CST complex subunit STN1 isoform X9

    UniProtKB/TrEMBL
    A0AAA9RSC3
    Related
    ENSBTAP00000075422.1, ENSBTAT00000089712.1
  3. XM_059881842.1XP_059737825.1  CST complex subunit STN1 isoform X3

  4. XM_059881841.1XP_059737824.1  CST complex subunit STN1 isoform X2

  5. XM_059881840.1XP_059737823.1  CST complex subunit STN1 isoform X1

  6. XM_059881846.1XP_059737829.1  CST complex subunit STN1 isoform X6

  7. XM_059881845.1XP_059737828.1  CST complex subunit STN1 isoform X5

  8. XM_059881844.1XP_059737827.1  CST complex subunit STN1 isoform X5

  9. XM_024985602.2XP_024841370.2  CST complex subunit STN1 isoform X10

    UniProtKB/TrEMBL
    A0AAA9TA19
    Related
    ENSBTAP00000095549.1, ENSBTAT00000122775.1
  10. XM_024985599.2XP_024841367.2  CST complex subunit STN1 isoform X7

    UniProtKB/TrEMBL
    A0AAA9SVP4, A0AAA9TA19
    Related
    ENSBTAP00000088089.1, ENSBTAT00000129347.1
  11. XM_024985600.2XP_024841368.2  CST complex subunit STN1 isoform X8

    UniProtKB/TrEMBL
    A0AAA9TA19
  12. XM_024985606.2XP_024841374.1  CST complex subunit STN1 isoform X12

    UniProtKB/Swiss-Prot
    Q08DB2
    UniProtKB/TrEMBL
    A0AAA9SSD8
    Related
    ENSBTAP00000086902.1, ENSBTAT00000097180.1
    Conserved Domains (2) summary
    cd04483
    Location:58157
    hOBFC1_like; hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which ...
    pfam09170
    Location:159336
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1
  13. XM_024985605.2XP_024841373.1  CST complex subunit STN1 isoform X11

    UniProtKB/TrEMBL
    A0AAA9SSD8
    Related
    ENSBTAP00000019995.6, ENSBTAT00000019995.7
    Conserved Domains (2) summary
    cd04483
    Location:58157
    hOBFC1_like; A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be ...
    pfam09170
    Location:159337
    STN1_2; CST, Suppressor of cdc thirteen homolog, complex subunit STN1