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KRCC1 lysine rich coiled-coil 1 [ Homo sapiens (human) ]

Gene ID: 51315, updated on 7-Oct-2019

Summary

Official Symbol
KRCC1provided by HGNC
Official Full Name
lysine rich coiled-coil 1provided by HGNC
Primary source
HGNC:HGNC:28039
See related
Ensembl:ENSG00000172086
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CHBP2
Expression
Ubiquitous expression in colon (RPKM 25.0), thyroid (RPKM 18.1) and 25 other tissues See more
Orthologs

Genomic context

See KRCC1 in Genome Data Viewer
Location:
2p11.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (88027205..88055783, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (88326724..88355315, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene lysine-rich coiled-coil 1 pseudogene Neighboring gene uncharacterized LOC105374852 Neighboring gene RNA, U2 small nuclear 63, pseudogene Neighboring gene skeletal muscle cis-regulatory module upstream of SMYD1 Neighboring gene SET and MYND domain containing 1 Neighboring gene microRNA 4780

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ22333

General protein information

Preferred Names
lysine-rich coiled-coil protein 1
Names
cryptogenic hepatitis-binding protein 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001304526.2NP_001291455.1  lysine-rich coiled-coil protein 1

    See identical proteins and their annotated locations for NP_001291455.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC015927, DB461504
    Consensus CDS
    CCDS2000.1
    UniProtKB/Swiss-Prot
    Q9NPI7
    UniProtKB/TrEMBL
    A0A024R5P4
    Related
    ENSP00000499834.1, ENST00000672766.1
  2. NM_016618.3NP_057702.1  lysine-rich coiled-coil protein 1

    See identical proteins and their annotated locations for NP_057702.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC108479, AF208845, DB461504
    Consensus CDS
    CCDS2000.1
    UniProtKB/Swiss-Prot
    Q9NPI7
    UniProtKB/TrEMBL
    A0A024R5P4
    Related
    ENSP00000340083.3, ENST00000347055.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    88027205..88055783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017004292.2XP_016859781.1  lysine-rich coiled-coil protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9NPI7
    UniProtKB/TrEMBL
    A0A024R5P4
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